Browse Element(s) Details


OsAffx.7021.1.S1_at

Description tigr:9639.m00590
TID=OsAffx.7021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0658011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06560OsAffx.7019.1.S1_at11/1111+3150825..3151366hypothetical protein
LOC_Os11g06570OsAffx.30844.1.S1_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.23721.1.S1_s_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.14491.2.S1_x_at6/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.47463.1.S1_x_at3/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06580OsAffx.7021.1.S1_at11/1111+3174948..3176057F-box domain containing protein
LOC_Os11g06590OsAffx.18709.1.S1_at11/1111+3179297..3179939trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os11g06600Os.46012.3.S1_x_at8/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.46012.2.S1_x_at7/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.27088.1.A1_x_at3/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06610OsAffx.7022.1.S1_at11/1111+3190193..319111160 kDa jasmonate-induced protein, putative
LOC_Os11g06620Os.47463.1.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620Os.14491.2.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620OsAffx.380.1.S1_at2/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7021.1.S1_at--828--9171Chr11:3175829..3175853 (25 bp)
TGCCGCATACACATGGGTGCTGAGT
LOC_Os11g06580
OsAffx.7021.1.S1_at--345--9851Chr11:3175836..3175860 (25 bp)
TACACATGGGTGCTGAGTTCAACTG
LOC_Os11g06580
OsAffx.7021.1.S1_at--984--9111Chr11:3175846..3175870 (25 bp)
TGCTGAGTTCAACTGTTCGGCTGAA
LOC_Os11g06580
OsAffx.7021.1.S1_at--996--9691Chr11:3175854..3175878 (25 bp)
TCAACTGTTCGGCTGAACTTCCCTT
LOC_Os11g06580
OsAffx.7021.1.S1_at--138--5491Chr11:3175868..3175892 (25 bp)
GAACTTCCCTTCCATTGAATCAATC
LOC_Os11g06580
OsAffx.7021.1.S1_at--84--7411Chr11:3175897..3175921 (25 bp)
GTGATCTGAAATATCAGGTCCTGGG
LOC_Os11g06580
OsAffx.7021.1.S1_at--556--1171Chr11:3175935..3175959 (25 bp)
AGTAATGCGATCTTTATATGGGTGC
LOC_Os11g06580
OsAffx.7021.1.S1_at--594--9551Chr11:3175945..3175969 (25 bp)
TCTTTATATGGGTGCAGAATGTTCT
LOC_Os11g06580
OsAffx.7021.1.S1_at--213--5271Chr11:3175961..3175985 (25 bp)
GAATGTTCTTTTCATGGTCTACCTC
LOC_Os11g06580
OsAffx.7021.1.S1_at--951--3491Chr11:3175973..3175997 (25 bp)
CATGGTCTACCTCAGGTCGATGCAG
LOC_Os11g06580
OsAffx.7021.1.S1_at--1133--3411Chr11:3175995..3176019 (25 bp)
CAGAGCAGAAAGGTGTTGGATCATT
LOC_Os11g06580
Target Sequence 
TGCCGCATACACATGGGTGCTGAGTTCAACTGTTCGGCTGAACTTCCCTTCCATTGAATCAATCAGGAGTGATCTGAAAT
ATCAGGTCCTGGGGTTTGATGATGAAAGTAATGCGATCTTTATATGGGTGCAGAATGTTCTTTTCATGGTCTACCTCAGG
TCGATGCAGAGCAGAAAGGTGTTGGATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis