Browse Element(s) Details


OsAffx.7019.1.S1_at

Description tigr:9639.m00584
TID=OsAffx.7019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein
LOC_Os11g06500OsAffx.20387.1.S1_x_at1/1111+3133931..3136258retrotransposon protein, putative, unclassified
LOC_Os11g06510OsAffx.7017.1.S1_at11/1111+3138276..3139388hypothetical protein
LOC_Os11g06520NANA11+3143396..3143821Pyruvate decarboxylase isozyme 3, putative
LOC_Os11g06530NANA11+3146073..3146934hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_x_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06550NANA11+3148556..3149096hypothetical protein
LOC_Os11g06560OsAffx.7019.1.S1_at11/1111+3150825..3151366hypothetical protein
LOC_Os11g06570OsAffx.30844.1.S1_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.23721.1.S1_s_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.14491.2.S1_x_at6/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.47463.1.S1_x_at3/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06580OsAffx.7021.1.S1_at11/1111+3174948..3176057F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7019.1.S1_at--715--6951Chr11:3150859..3150883 (25 bp)
GTAGCACACTGAGACAAATCTTGAG
LOC_Os11g06560
OsAffx.7019.1.S1_at--343--7591Chr11:3151121..3151145 (25 bp)
GGGAACCTCGTGCTAACTGGCCCAT
LOC_Os11g06560
OsAffx.7019.1.S1_at--75--9071Chr11:3151131..3151155 (25 bp)
TGCTAACTGGCCCATCTTTTGCCAT
LOC_Os11g06560
OsAffx.7019.1.S1_at--108--451Chr11:3151144..3151168 (25 bp)
ATCTTTTGCCATCTCGGTGTATGTC
LOC_Os11g06560
OsAffx.7019.1.S1_at--424--7431Chr11:3151160..3151184 (25 bp)
GTGTATGTCGGCATTGACCTGATCA
LOC_Os11g06560
OsAffx.7019.1.S1_at--199--5831Chr11:3151175..3151199 (25 bp)
GACCTGATCAATCTCCATGACGGTA
LOC_Os11g06560
OsAffx.7019.1.S1_at--508--10212Chr11:3151245..3151269 (25 bp)
TATTCTGCAATACCTGCACCTGTGA
LOC_Os11g06560
OsAffx.7019.1.S1_at--220--7371Chr11:3151266..3151290 (25 bp)
GTGACTTCACCGACTACAACAGTGC
LOC_Os11g06560
OsAffx.7019.1.S1_at--1054--2471Chr11:3151283..3151307 (25 bp)
AACAGTGCCATAGTCGAGACGGTCA
LOC_Os11g06560
OsAffx.7019.1.S1_at--726--5751Chr11:3151300..3151324 (25 bp)
GACGGTCATCACATGGTATGGCCCA
LOC_Os11g06560
OsAffx.7019.1.S1_at--234--391Chr11:3151307..3151331 (25 bp)
ATCACATGGTATGGCCCAGCTGAGG
LOC_Os11g06560
Target Sequence 
GTAGCACACTGAGACAAATCTTGAGTATGAATAAAAGGGAGTACAGAGGAAAAACTAAGGGTAAAATAAAGGTGTCCAAG
GGGAACCTCGTGCTAACTGGCCCATCTTTTGCCATCTCGGTGTATGTCGGCATTGACCTGATCAATCTCCATGACGGTAG
CCAAGAAGAAGAAGATGACGATGAGGAAGATAACGTTGGGGAGATATTCTGCAATACCTGCACCTGTGACTTCACCGACT
ACAACAGTGCCATAGTCGAGACGGTCATCACATGGTATGGCCCAGCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis