Browse Element(s) Details


OsAffx.18708.1.S1_at

Description tigr:9639.m00586
TID=OsAffx.18708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0654011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein
LOC_Os11g06500OsAffx.20387.1.S1_x_at1/1111+3133931..3136258retrotransposon protein, putative, unclassified
LOC_Os11g06510OsAffx.7017.1.S1_at11/1111+3138276..3139388hypothetical protein
LOC_Os11g06520NANA11+3143396..3143821Pyruvate decarboxylase isozyme 3, putative
LOC_Os11g06530NANA11+3146073..3146934hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_x_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06550NANA11+3148556..3149096hypothetical protein
LOC_Os11g06560OsAffx.7019.1.S1_at11/1111+3150825..3151366hypothetical protein
LOC_Os11g06570OsAffx.30844.1.S1_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.23721.1.S1_s_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.14491.2.S1_x_at6/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.47463.1.S1_x_at3/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18708.1.S1_at--9--8291Chr11:3147775..3147799 (25 bp)
GGCTTCCATCAACACGCGGGAGCTA
LOC_Os11g06540
OsAffx.18708.1.S1_at--66--4911Chr11:3147774..3147798 (25 bp)
GCTTCCATCAACACGCGGGAGCTAG
LOC_Os11g06540
OsAffx.18708.1.S1_at--582--3631Chr11:3147773..3147797 (25 bp)
CTTCCATCAACACGCGGGAGCTAGG
LOC_Os11g06540
OsAffx.18708.1.S1_at--443--4611Chr11:3147707..3147731 (25 bp)
GCGAGTTACTGGAGGGGTTCTTCTC
LOC_Os11g06540
OsAffx.18708.1.S1_at--879--7511Chr11:3147663..3147687 (25 bp)
GTGGATCTCTCCGGGATGCCGGCGA
LOC_Os11g06540
OsAffx.18708.1.S1_at--452--7131Chr11:3147571..3147595 (25 bp)
GTCATCGCTCGGGAACAGCAAGGGC
LOC_Os11g06540
OsAffx.18708.1.S1_at--870--9611Chr11:3147570..3147594 (25 bp)
TCATCGCTCGGGAACAGCAAGGGCG
LOC_Os11g06540
OsAffx.18708.1.S1_at--230--3191Chr11:3147553..3147577 (25 bp)
CAAGGGCGGAGGGAAGCTCACCCGT
LOC_Os11g06540
OsAffx.18708.1.S1_at--670--5391Chr11:3147541..3147565 (25 bp)
GAAGCTCACCCGTGGCGCGGTCATC
LOC_Os11g06540
OsAffx.18708.1.S1_at--506--9431Chr11:3147500..3147524 (25 bp)
TCGTGGCTGTGCTCATCGTCATGCT
LOC_Os11g06540
OsAffx.18708.1.S1_at--700--3991Chr11:3147499..3147523 (25 bp)
CGTGGCTGTGCTCATCGTCATGCTT
LOC_Os11g06540
Target Sequence 
GGCTTCCATCAACACGCGGGAGCTAGGGCGAGCTCCGGCGCTGAACCTCTCCGGTAACCGGCTCACCGGCGAGTTACTGG
AGGGGTTCTTCTCGCTGGCGCTGCTCGAGAAGGTGGATCTCTCCGGGATGCCGGCGAGCGCCTTCCTCGGCACGACGCTC
TGCGGCGCCCTGCTCGCCCCGTGCGCCAACCCCGCGCTGCTGCCGTCATCGCTCGGGAACAGCAAGGGCGGAGGGAAGCT
CACCCGTGGCGCGGTCATCGGCATCATCCTCGACGTCGTGGCTGTGCTCATCGTCATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis