Browse Element(s) Details


OsAffx.18715.1.S1_at

Description tigr:9639.m00643
TID=OsAffx.18715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0707011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed
LOC_Os11g07060Os.49831.1.S1_at11/1111+3513705..3518114Leucine Rich Repeat family protein, expressed
LOC_Os11g07070OsAffx.18715.1.S1_at11/1111+3519331..3520063hypothetical protein
LOC_Os11g07080OsAffx.8572.1.S1_s_at11/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07080OsAffx.8572.1.S1_at9/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07090OsAffx.30852.1.S1_at11/1111+3528149..3529750Pectinesterase family protein, expressed
LOC_Os11g07100OsAffx.30853.1.S1_at11/1111+3531469..3532103hypothetical protein
LOC_Os11g07110OsAffx.18716.1.S1_at11/1111+3532785..3536087Leucine Rich Repeat family protein, expressed
LOC_Os11g07120OsAffx.18717.1.S1_at11/1111+3538103..3541241Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18715.1.S1_at--524--1831Chr11:3519963..3519987 (25 bp)
ACGCGCTCGAGGAGCAAGGGTACAC
LOC_Os11g07070
OsAffx.18715.1.S1_at--515--4371Chr11:3519507..3519886 (25 bp)
CCACTGCCGGGCAAAGGCGAGCGAG
LOC_Os11g07070
OsAffx.18715.1.S1_at--1133--5731Chr11:3519459..3519483 (25 bp)
GACGGCGTCGGCTGTGCAGGAGTTG
LOC_Os11g07070
OsAffx.18715.1.S1_at--760--3471Chr11:3519443..3519467 (25 bp)
CAGGAGTTGGAGTAGGAATCCTCGT
LOC_Os11g07070
OsAffx.18715.1.S1_at--446--1171Chr11:3519433..3519457 (25 bp)
AGTAGGAATCCTCGTGATCGACCTC
LOC_Os11g07070
OsAffx.18715.1.S1_at--641--5251Chr11:3519428..3519452 (25 bp)
GAATCCTCGTGATCGACCTCGAGTT
LOC_Os11g07070
OsAffx.18715.1.S1_at--459--9371Chr11:3519416..3519440 (25 bp)
TCGACCTCGAGTTCGCCGATGTGCT
LOC_Os11g07070
OsAffx.18715.1.S1_at--1127--9311Chr11:3519404..3519428 (25 bp)
TCGCCGATGTGCTCGAGCATTACCG
LOC_Os11g07070
OsAffx.18715.1.S1_at--1142--6251Chr11:3519399..3519423 (25 bp)
GATGTGCTCGAGCATTACCGGCCAC
LOC_Os11g07070
OsAffx.18715.1.S1_at--359--4851Chr11:3519388..3519412 (25 bp)
GCATTACCGGCCACCGTGGGTACCG
LOC_Os11g07070
OsAffx.18715.1.S1_at--95--8631Chr11:3519372..3519396 (25 bp)
TGGGTACCGCCATCTCCGGTTGGGT
LOC_Os11g07070
Target Sequence 
ACGCGCTCGAGGAGCAAGGGTACACGGAGGGGGAGGTCGAGGAGCGCGTCGAGCAGGCGCGCAAGGAGGCCGAGGAGGAA
GGACGCGGCGCGGGGCGGCGGCCACTGCCGGGCAAAGGCGAGCGAGGTCACCGCCGCGGTGTTGGCGGCGACGGCGTCGG
CTGTGCAGGAGTTGGAGTAGGAATCCTCGTGATCGACCTCGAGTTCGCCGATGTGCTCGAGCATTACCGGCCACCGTGGG
TACCGCCATCTCCGGTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis