Browse Element(s) Details


OsAffx.18735.1.S1_at

Description tigr:9639.m00728
TID=OsAffx.18735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0790010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07890Os.47463.1.S1_x_at6/1111+4045483..4056555transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g07890Os.14491.2.S1_x_at4/1111+4045483..4056555transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g07890Os.57514.1.S1_x_at2/1111+4045483..4056555transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g07900OsAffx.18735.1.S1_at10/1111+4067836..4070066hypothetical protein
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18735.1.S1_at--347--4271NONE
CCGGCCGCAATCGAGTAGAGGAGAT
NONE
OsAffx.18735.1.S1_at--304--111Chr11:4069712..4069736 (25 bp)
ATTCGGCGCCGGGATTGCGATTTTG
LOC_Os11g07900
OsAffx.18735.1.S1_at--644--10651Chr11:4069698..4069722 (25 bp)
TTGCGATTTTGGTTCGCCATTGGCG
LOC_Os11g07900
OsAffx.18735.1.S1_at--1113--11Chr11:4069680..4069704 (25 bp)
ATTGGCGGCGTCGTTGATTCTCGTC
LOC_Os11g07900
OsAffx.18735.1.S1_at--466--111Chr11:4069668..4069688 (21 bp)
ATTCTCGTCGTGTCAGCTCTGAAAA
LOC_Os11g07900
OsAffx.18735.1.S1_at--441--4456Chr11:23781492..23781516 (25 bp)
GCCTTTTGCCTTCGCGAGAAATGCT
NONE
OsAffx.18735.1.S1_at--488--10771Chr11:4068557..4068581 (25 bp)
TTGATTTCCAAAGCGCTCCAATTGA
LOC_Os11g07900
OsAffx.18735.1.S1_at--140--891Chr11:4068366..4068390 (25 bp)
AGGCGAGTCACCGAGAAGTTTCTAA
LOC_Os11g07900
OsAffx.18735.1.S1_at--366--5332Chr11:4068352..4068376 (25 bp)
GAAGTTTCTAATCTCCTCGGAACAC
LOC_Os11g07900
OsAffx.18735.1.S1_at--188--9451Chr11:4068336..4068360 (25 bp)
TCGGAACACCACCAGCAAATAGATC
LOC_Os11g07900
OsAffx.18735.1.S1_at--451--14140Chr11:12628245..12628270 (25 bp)
AGACAAGAGCGATTTTTTCCCGAAG
NONE
Target Sequence 
CCGGCCGCAATCGAGTAGAGGAGATTCGGCGCCGGGATTGCGATTTTGGTTCGCCATTGGCGGCGTCGTTGATTCTCGTC
GTGTCAGCTCTGAAAATAGGGAAACCCTGTATTTAATGAATATTTACAAATACATGAGGGCTCCCGCAGGAGTTCGCCTT
TTGCCTTCGCGAGAAATGCTTAATGAAAAGATTAGACAAATCCAAGTTTATGCTTCAAGAAAATGGAGGCGATTTGATTT
CCAAAGCGCTCCAATTGATGAGAAGGAGGCGAGTCACCGAGAAGTTTCTAATCTCCTCGGAACACCACCAGCAAATAGAT
CAATGTATTCTAAGCAGAGGATATATCACAGAATCATCCACAGAAACATCACAGAAAGAGACAAGAGCGATTTTTTCCCG
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis