Browse Element(s) Details


OsAffx.18785.1.S1_at

Description tigr:9639.m01002
TID=OsAffx.18785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1060010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10560OsAffx.18783.1.S1_at11/1111+5788060..5789251hypothetical protein
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10580NANA11+5799043..5801418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10590Os.9836.1.S1_at4/1111+5804219..5804485hypothetical protein
LOC_Os11g10600OsAffx.18785.1.S1_at10/1111+5808753..5811520hypothetical protein
LOC_Os11g10600OsAffx.25936.5.S1_x_at1/1111+5808753..5811520hypothetical protein
LOC_Os11g10610OsAffx.7065.1.S1_s_at11/1111+5816301..5822197Leucine Rich Repeat family protein, expressed
LOC_Os11g10620OsAffx.30917.1.S1_at11/1111+5823814..5824134NBS-LRR disease resistance protein, putative
LOC_Os11g10630NANA11+5827259..5829679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10640OsAffx.18786.1.S1_at11/1111+5830697..5836246Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18785.1.S1_at--403--7331Chr11:5808718..5808742 (25 bp)
GTGCATGTCACCTTTGGTTCTGGTA
NONE
OsAffx.18785.1.S1_at--452--9271Chr11:5808761..5808785 (25 bp)
TCCTGGGTTCGGACTGTTTCGTCAA
LOC_Os11g10600
OsAffx.18785.1.S1_at--242--6831Chr11:5808776..5808800 (25 bp)
GTTTCGTCAAGCGAAGGAGCCTGAC
LOC_Os11g10600
OsAffx.18785.1.S1_at--334--7811Chr11:5808807..5808831 (25 bp)
GGTCGTCAGGAGGATTATGTTTCAA
LOC_Os11g10600
OsAffx.18785.1.S1_at--909--2071Chr11:5810685..5810709 (25 bp)
ACATTGAAGTGGTTGATCTGCGCGG
LOC_Os11g10600
OsAffx.18785.1.S1_at--662--8511Chr11:5810711..5810735 (25 bp)
TGGCAATGGAGCTTCCGACGGGAAA
LOC_Os11g10600
OsAffx.18785.1.S1_at--1040--4611Chr11:5810787..5810811 (25 bp)
GCGAGTGCGATGTTGATTCGGCAAC
LOC_Os11g10600
OsAffx.18785.1.S1_at--108--1151Chr11:5811343..5811367 (25 bp)
AGTCGCTCACGCTTGTCACGTTGGA
LOC_Os11g10600
OsAffx.18785.1.S1_at--1119--7091Chr11:5811357..5811381 (25 bp)
GTCACGTTGGATATTCGCAGGCTAG
LOC_Os11g10600
OsAffx.18785.1.S1_at--803--9371Chr11:5811437..5811461 (25 bp)
TCGAGTCACCCGTCCGAAGTGTCTG
LOC_Os11g10600
OsAffx.18785.1.S1_at--269--2871Chr11:5811453..5811477 (25 bp)
AAGTGTCTGCTTCCACCGATTGGAT
LOC_Os11g10600
Target Sequence 
GTGCATGTCACCTTTGGTTCTGGTATATTTTGACGATGAGTAGTCCTGGGTTCGGACTGTTTCGTCAAGCGAAGGAGCCT
GACAGATGGGGTCGTCAGGAGGATTATGTTTCAATGACTGGTCGTGGAGGTCGAGGACATTATGGCTTTAATTTATTTGG
GGAGTTCAGGGCTTTAATAGGAGCATCATTAACCTGCAAATATGGAATACAAGGAGCCAAGGTAACAAGAAAGACCGACA
TTGAAGTGGTTGATCTGCGCGGGTGGCAATGGAGCTTCCGACGGGAAAAGCAGCGGTCGGCGGAGATCGATGATGGCGCG
GAGGAGACTGGCCAGGCGTGCGAGTGCGATGTTGATTCGGCAACGGAGATCGGTGGCGGCACGGAGAAGGGTAGATTAAG
GGTAGCGGAAGGGGCAGTCGCTCACGCTTGTCACGTTGGATATTCGCAGGCTAGAAAACCCAAGCGTGGGGGACTGCCAC
TCCCTGTTGAAAATAGCTCATTGAAAAATTCGAGTCACCCGTCCGAAGTGTCTGCTTCCACCGATTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis