Browse Element(s) Details


OsAffx.18829.1.S1_at

Description tigr:9639.m01242
TID=OsAffx.18829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1351011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13459OsAffx.20387.1.S1_x_at3/1111+7369479..7375466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g13480NANA11+7377327..7379480hypothetical protein
LOC_Os11g13490Os.54455.1.S1_at11/1111+7387208..7390835expressed protein
LOC_Os11g13490OsAffx.7102.1.S1_at9/1111+7387208..7390835expressed protein
LOC_Os11g13500OsAffx.19701.1.S1_s_at2/1111+7393148..7395706hypothetical protein
LOC_Os11g13500OsAffx.19701.1.S1_at1/1111+7393148..7395706hypothetical protein
LOC_Os11g13510OsAffx.18829.1.S1_at11/1111+7400305..7403674NB-ARC domain containing protein
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein
LOC_Os11g13540OsAffx.30954.1.S1_at11/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13540OsAffx.30954.2.S1_x_at1/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13550NANA11+7427808..7428296hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18829.1.S1_at--20--9251Chr11:7403128..7403152 (25 bp)
TCCTTCGCCGTGTTTCCTGGAAAAG
LOC_Os11g13510
OsAffx.18829.1.S1_at--87--10171Chr11:7403176..7403200 (25 bp)
TATACATTACTTTTCCAGGTTTCCG
LOC_Os11g13510
OsAffx.18829.1.S1_at--215--9511Chr11:7403220..7403244 (25 bp)
TCTCTAGATGTCTCACCTACTTGGA
LOC_Os11g13510
OsAffx.18829.1.S1_at--250--1271Chr11:7403290..7403314 (25 bp)
AGATTTGCCTGCTCTTATTGTCCTA
LOC_Os11g13510
OsAffx.18829.1.S1_at--325--7611Chr11:7403328..7403352 (25 bp)
GGGAAGCTCTCGTGTATGGAATCAG
LOC_Os11g13510
OsAffx.18829.1.S1_at--387--5251Chr11:7403346..7403370 (25 bp)
GAATCAGGATCAGCCATGGTGCATT
LOC_Os11g13510
OsAffx.18829.1.S1_at--532--71Chr11:7403368..7403392 (25 bp)
ATTCCAATGTTTGGCACGCCTACGT
LOC_Os11g13510
OsAffx.18829.1.S1_at--863--2951Chr11:7403448..7403472 (25 bp)
AATGGCTTAGCGTTGAATTCGGTGC
LOC_Os11g13510
OsAffx.18829.1.S1_at--223--10451Chr11:7403501..7403525 (25 bp)
TTAGAGGTTGGCATCCGGCACATCA
LOC_Os11g13510
OsAffx.18829.1.S1_at--407--531Chr11:7403540..7403564 (25 bp)
ATCGACTTTTCTATCCTGGTGCTCA
LOC_Os11g13510
OsAffx.18829.1.S1_at--871--2791Chr11:7403612..7403636 (25 bp)
AAGATGCTTCCACAACGTCCTGAGG
LOC_Os11g13510
Target Sequence 
TCCTTCGCCGTGTTTCCTGGAAAAGTTTGTTTACAAGAGTAGTTGCAATATACATTACTTTTCCAGGTTTCCGAAGTGGA
TTCATCCCACACTCTCTAGATGTCTCACCTACTTGGATATCGACGTTAAACAAATGGAACGAGAACATGTACGTATTCTT
GAAGATTTGCCTGCTCTTATTGTCCTACACCTAGACATAGGGGAAGCTCTCGTGTATGGAATCAGGATCAGCCATGGTGC
ATTCCAATGTTTGGCACGCCTACGTTTCTGCAACAGATCTGGACCTGGTTTGGTATTCAAAGGAGGCATGCCAAAGCTCG
AATGGCTTAGCGTTGAATTCGGTGCAGAGAGGGCACAATCAACATATGGCAGTTTAGAGGTTGGCATCCGGCACATCACA
TCTCTCAAACATATCGACTTTTCTATCCTGGTGCTCACTGACGATATGGAGTGGAAAATCAAATCATCTATAAATAGCCA
AGTCAAGATGCTTCCACAACGTCCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis