Browse Element(s) Details


OsAffx.1885.1.S1_at

Description tigr:9629.m03822
TID=OsAffx.1885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4008011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40040OsAffx.23592.1.S1_at11/111+22914350..22916823hypothetical protein
LOC_Os01g40050Os.11777.1.S1_at10/111+22918204..22923012peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1885.1.S1_at--901--10391Chr01:22941020..22941044 (25 bp)
TTGTTGCCCACTGCGTTCTTGGGTC
LOC_Os01g40080
OsAffx.1885.1.S1_at--469--3331Chr01:22941028..22941052 (25 bp)
CACTGCGTTCTTGGGTCTCGGACGA
LOC_Os01g40080
OsAffx.1885.1.S1_at--300--9591Chr01:22941036..22941060 (25 bp)
TCTTGGGTCTCGGACGAGCGTGCCC
LOC_Os01g40080
OsAffx.1885.1.S1_at--989--5773Chr08:28282499..28282518 (20 bp)
GACGAGCGTGCCCACGGGCAAAATA
NONE
OsAffx.1885.1.S1_at--917--7295Chr08:28282501..28282569 (25 bp)
GTGCCCACGGGCAAAATATTACACC
NONE
OsAffx.1885.1.S1_at--1008--5134Chr05:1119825..1119849 (25 bp)
GCAAAATATTACACCCATGCCCATG
NONE
OsAffx.1885.1.S1_at--62--611Chr01:22941081..22941105 (25 bp)
ATGCCCATGCCCATCGGATCGGTTA
LOC_Os01g40080
OsAffx.1885.1.S1_at--844--591Chr01:22941087..22941111 (25 bp)
ATGCCCATCGGATCGGTTATTCACA
LOC_Os01g40080
OsAffx.1885.1.S1_at--419--6391Chr01:22941097..22941121 (25 bp)
GATCGGTTATTCACAGATACCCGGA
LOC_Os01g40080
OsAffx.1885.1.S1_at--897--10211Chr01:22941104..22941128 (25 bp)
TATTCACAGATACCCGGACCCACGG
LOC_Os01g40080
OsAffx.1885.1.S1_at--854--7811Chr01:22941128..22941152 (25 bp)
GGTAAAACTGCCATTCCTAAAATAT
LOC_Os01g40080
Target Sequence 
TTGTTGCCCACTGCGTTCTTGGGTCTCGGACGAGCGTGCCCACGGGCAAAATATTACACCCATGCCCATGCCCATCGGAT
CGGTTATTCACAGATACCCGGACCCACGGGTAAAACTGCCATTCCTAAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis