Browse Element(s) Details


OsAffx.18864.1.S1_at

Description tigr:9639.m01438
TID=OsAffx.18864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1549011/11hypothetical protein
LOC_Os09g221502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g432102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g438701/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15440OsAffx.448.1.S1_x_at1/1111+8746649..8750436retrotransposon protein, putative, unclassified
LOC_Os11g15450NANA11+8750710..8754780retrotransposon protein, putative, unclassified
LOC_Os11g15460OsAffx.30993.1.S1_at11/1111+8756938..8758306Ank repeat PF|00023 containing protein, putative
LOC_Os11g15470OsAffx.7119.1.S1_at11/1111+8759232..8759669hypothetical protein
LOC_Os11g15480NANA11+8761741..8762363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15490OsAffx.18864.1.S1_at11/1111+8771037..8771682hypothetical protein
LOC_Os11g15500OsAffx.30994.1.S1_at11/1111+8774339..8777441NB-ARC domain containing protein
LOC_Os11g15510OsAffx.18865.1.S1_at11/1111+8778423..8780390hypothetical protein
LOC_Os11g15520Os.57100.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed
LOC_Os11g15520OsAffx.18866.1.S1_at11/1111+8784245..8792475Subtilase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18864.1.S1_at--981--10713Chr11:8771610..8771634 (25 bp)
TTGAAGGAAGCATTTGATCAGGCAA
LOC_Os11g15490
OsAffx.18864.1.S1_at--690--931Chr11:8771585..8771609 (25 bp)
AGGCACAAGCTTTGAGGGAGAACAT
LOC_Os11g15490
OsAffx.18864.1.S1_at--360--8892Chr07:26236697..26236841 (25 bp)
TGAGGGATATTTTTTGTCCATGCTT
LOC_Os07g43870
OsAffx.18864.1.S1_at--684--174Chr11:8771553..8771577 (25 bp)
ATTTTTTGTCCATGCTTTGATTACG
LOC_Os11g15490
OsAffx.18864.1.S1_at--45--10814Chr12:18163139..18163330 (25 bp)
TTGTCCATGCTTTGATTACGAAGAT
NONE
OsAffx.18864.1.S1_at--1052--4871Chr11:8771540..8771564 (25 bp)
GCTTTGATTACGAAGATCAGCTGGA
LOC_Os11g15490
OsAffx.18864.1.S1_at--1091--8211Chr11:8771096..8771433 (25 bp)
GGCAAGTGCCAGCTTCGTTTTCTAT
LOC_Os11g15490
OsAffx.18864.1.S1_at--684--2851Chr11:8771093..8771430 (25 bp)
AAGTGCCAGCTTCGTTTTCTATGCG
LOC_Os11g15490
OsAffx.18864.1.S1_at--548--4411Chr11:8771089..8771110 (22 bp)
GCCAGCTTCGTTTTCTATGCGGAGG
LOC_Os11g15490
OsAffx.18864.1.S1_at--644--4911Chr11:8771085..8771109 (25 bp)
GCTTCGTTTTCTATGCGGAGGGAAA
LOC_Os11g15490
OsAffx.18864.1.S1_at--839--1051Chr11:8771067..8771091 (25 bp)
AGGGAAAGAGTTCCCATCTAGGATC
LOC_Os11g15490
Target Sequence 
TTGAAGGAAGCATTTGATCAGGCAAAGGCACAAGCTTTGAGGGAGAACATGAGGGATATTTTTTGTCCATGCTTTGATTA
CGAAGATCAGCTGGAGTTTGGTTACGAAGAATGCCTGAAAGAGCAGGCACAACCTGGGCCGTGGCGCGAGACACTGATGG
AGATCAGAGATATGTGGCTAAGGCTCCTCATTTACGTTGCCGGCAAGTGCCAGCTTCGTTTTCTATGCGGAGGGAAAGAG
TTCCCATCTAGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis