Browse Element(s) Details


OsAffx.18891.1.S1_at

Description tigr:9639.m01557
TID=OsAffx.18891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1703011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16979NANA11+9393144..9394179NA
LOC_Os11g16990OsAffx.31011.1.S1_at11/1111+9395240..9395974hypothetical protein
LOC_Os11g17002NANA11+9400608..9400825NA
LOC_Os11g17014OsAffx.18890.1.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17014Os.53348.2.S1_at11/1111+9401521..9410404NB-ARC domain containing protein, expressed
LOC_Os11g17030OsAffx.18891.1.S1_at11/1111+9416048..9416443hypothetical protein
LOC_Os11g17040OsAffx.31013.1.S1_at11/1111+9418202..9418555hypothetical protein
LOC_Os11g17049NANA11+9423126..9423886NA
LOC_Os11g17060OsAffx.7129.1.S1_at11/1111+9433264..9433883hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18891.1.S1_at--231--4031Chr11:9416101..9416125 (25 bp)
CGTAGAGATGGGTTACTGGCAGTCT
LOC_Os11g17030
OsAffx.18891.1.S1_at--278--9931Chr11:9416114..9416138 (25 bp)
TACTGGCAGTCTTTGGTTTCGCTCA
LOC_Os11g17030
OsAffx.18891.1.S1_at--237--8591Chr11:9416127..9416151 (25 bp)
TGGTTTCGCTCATCGGCGACAACTT
LOC_Os11g17030
OsAffx.18891.1.S1_at--804--5871Chr11:9416210..9416234 (25 bp)
GAGCGCAGCCACATACGGAGCCGGT
LOC_Os11g17030
OsAffx.18891.1.S1_at--970--9911Chr11:9416223..9416247 (25 bp)
TACGGAGCCGGTCTATTCACCGGAA
LOC_Os11g17030
OsAffx.18891.1.S1_at--694--7571Chr11:9416249..9416273 (25 bp)
GGGCGGTCGATGTCCTCCTTCCGCA
LOC_Os11g17030
OsAffx.18891.1.S1_at--634--3331Chr11:9416272..9416296 (25 bp)
CACCGCACGCAATGGAGGGTACCCT
LOC_Os11g17030
OsAffx.18891.1.S1_at--547--8531Chr11:9416284..9416308 (25 bp)
TGGAGGGTACCCTCGCCAGAGCCAG
LOC_Os11g17030
OsAffx.18891.1.S1_at--887--8251Chr11:9416308..9416332 (25 bp)
GGCAGCCAGCGCCAGAGTCCATCGA
LOC_Os11g17030
OsAffx.18891.1.S1_at--928--1771Chr11:9416345..9416369 (25 bp)
ACCGGCGGCATCTTGCTCATCGTTA
LOC_Os11g17030
OsAffx.18891.1.S1_at--822--4211Chr11:9416389..9416413 (25 bp)
CCGCTTCATTGACCTCCTCGAGAGG
LOC_Os11g17030
Target Sequence 
CGTAGAGATGGGTTACTGGCAGTCTTTGGTTTCGCTCATCGGCGACAACTTCCCTTCGCAGCCGGCGCAGGAGGATGCGG
TGGTAGTGGAGGATATTGCCAAGACGGACGAGCGCAGCCACATACGGAGCCGGTCTATTCACCGGAAGGGGCGGTCGATG
TCCTCCTTCCGCACCGCACGCAATGGAGGGTACCCTCGCCAGAGCCAGGCAGCCAGCGCCAGAGTCCATCGAACCAGTCG
CCACACCGGCGGCATCTTGCTCATCGTTATCCTCGTCCACCGCTTCCTCCGCTTCATTGACCTCCTCGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis