Browse Element(s) Details


OsAffx.18901.1.S1_at

Description tigr:9636.m01393
TID=OsAffx.18901.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1750411/11Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17460NANA11+9711287..9712350retrotransposon protein, putative, unclassified
LOC_Os11g17469NANA11+9721297..9721616NA
LOC_Os11g17480OsAffx.18899.1.S1_at11/1111+9726250..9729878Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17490Os.53540.2.S1_at1/1111+9730897..9731630hypothetical protein
LOC_Os11g17504Os.10419.1.S1_a_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17504OsAffx.18901.1.S1_at11/1111+9732859..9737703Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17520OsAffx.13097.1.S1_s_at11/1111+9739339..9743409hypothetical protein
LOC_Os11g17520Os.46613.1.S2_at2/1111+9739339..9743409hypothetical protein
LOC_Os11g17530Os.57138.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17530Os.6596.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17540Os.48441.1.S1_at11/1111+9751085..9754806Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17550OsAffx.31019.1.S1_at11/1111+9755436..9756398hypothetical protein
LOC_Os11g17560OsAffx.31020.1.S1_at11/1111+9758124..9758684hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18901.1.S1_at--88--3471Chr11:9733154..9733178 (25 bp)
CAGTGATCACTACTGCCATTTGTTC
LOC_Os11g17504
OsAffx.18901.1.S1_at--990--6731Chr11:9733175..9733199 (25 bp)
GTTCATTCCTTGGTGATTATGGACT
LOC_Os11g17504
OsAffx.18901.1.S1_at--861--10071Chr11:9733192..9733216 (25 bp)
TATGGACTGATGATGAACTGCTAAT
LOC_Os11g17504
OsAffx.18901.1.S1_at--319--4771Chr11:9733227..9733251 (25 bp)
GCTGCTGCATGCGTGATTGTTAATT
LOC_Os11g17504
OsAffx.18901.1.S1_at--755--7032Chr11:9733290..9733314 (25 bp)
GTAAATTTTCTTTGTCATCCTCCTC
LOC_Os11g17504
OsAffx.18901.1.S1_at--652--1212Chr11:9733321..9733345 (25 bp)
AGTTTTCTTTTCTAGCACAAATCAT
LOC_Os11g17504
OsAffx.18901.1.S1_at--432--2872Chr11:9733512..9733536 (25 bp)
AAGTGTGTAGCTTTGCATGCGTATG
LOC_Os11g17504
OsAffx.18901.1.S1_at--799--10111Chr11:9733533..9733557 (25 bp)
TATGGGTAGACTCCTCTTTGCACTA
LOC_Os11g17504
OsAffx.18901.1.S1_at--680--5911Chr11:9733586..9733610 (25 bp)
GAGCACCTACTTTTTCACCATAAAA
LOC_Os11g17504
OsAffx.18901.1.S1_at--1082--7711Chr11:9733613..9733637 (25 bp)
GGGTGTCCGATTTGTAGCCATGTCA
LOC_Os11g17504
OsAffx.18901.1.S1_at--806--10251Chr11:9733623..9733647 (25 bp)
TTTGTAGCCATGTCACAATCGCATG
LOC_Os11g17504
Target Sequence 
CAGTGATCACTACTGCCATTTGTTCATTCCTTGGTGATTATGGACTGATGATGAACTGCTAATTTCATTGCTTGCTGCTG
CATGCGTGATTGTTAATTTGGTTTAACTCCTCAGGTTTCCAAGCGCCGTTACTGAGGTAAATTTTCTTTGTCATCCTCCT
CTTTTCTAGTTTTCTTTTCTAGCACAAATCATATTACTTTTTTGATTAAAATATAATCGTGTAAGATATTACTGTAAAAA
TTTAATTATAACAAATATAATGGTATGATCAAATCGTTTATATGGTAAATAATTTAGGAAAAAATAGTTTGAAGATACGA
GAAGGAGGCTAAAATAAAATATATGGGAATGAGATATAAAGTGTGTAGCTTTGCATGCGTATGGGTAGACTCCTCTTTGC
ACTAGCCAAAAATGCAACAGTGTAGTAGGGGAGAGCACCTACTTTTTCACCATAAAATCGGGTGTCCGATTTGTAGCCAT
GTCACAATCGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis