Browse Element(s) Details


OsAffx.18909.1.S1_at

Description tigr:9639.m01654
TID=OsAffx.18909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1797011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17940OsAffx.31032.1.S1_at10/1111+10053756..10054910hypothetical protein
LOC_Os11g17954Os.54358.1.S1_at11/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.9060.1.S1_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.27865.1.S1_x_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17970OsAffx.18909.1.S1_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17970OsAffx.18909.1.S1_x_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17980OsAffx.31033.1.S1_at10/1111+10081039..10081907hypothetical protein
LOC_Os11g17990Os.46012.3.S1_x_at5/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.2.S1_x_at3/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.3.S1_at2/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.54691.1.S1_x_at1/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g18000OsAffx.31034.1.S1_at10/1111+10094394..10097516hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18909.1.S1_at--330--4251Chr11:10080045..10080069 (25 bp)
CCGTCGAGGTCAAGCGGAGGAGACT
LOC_Os11g17970
OsAffx.18909.1.S1_at--326--8011Chr11:10080060..10080084 (25 bp)
GGAGGAGACTAGTGGCGTCGTCGTC
LOC_Os11g17970
OsAffx.18909.1.S1_at--476--8271Chr11:10080242..10080266 (25 bp)
GGCATGGCGGCGTGGCTCAACACCA
LOC_Os11g17970
OsAffx.18909.1.S1_at--35--8491Chr11:10080246..10080270 (25 bp)
TGGCGGCGTGGCTCAACACCATGCT
LOC_Os11g17970
OsAffx.18909.1.S1_at--913--5431Chr11:10080331..10080355 (25 bp)
GAACCTGAACGAGAGCAGGCTCGAT
LOC_Os11g17970
OsAffx.18909.1.S1_at--625--2591Chr11:10080338..10080362 (25 bp)
AACGAGAGCAGGCTCGATCTCTTCT
LOC_Os11g17970
OsAffx.18909.1.S1_at--306--1371Chr11:10080342..10080366 (25 bp)
AGAGCAGGCTCGATCTCTTCTACTG
LOC_Os11g17970
OsAffx.18909.1.S1_at--813--3911Chr11:10080375..10080399 (25 bp)
CTGGCATCGAGCTGGTGGCGTTCAT
LOC_Os11g17970
OsAffx.18909.1.S1_at--1100--851Chr11:10080398..10080422 (25 bp)
ATGGCGTACCTCCTGTTTGCGTGGA
LOC_Os11g17970
OsAffx.18909.1.S1_at--902--3871Chr11:10080410..10080434 (25 bp)
CTGTTTGCGTGGAGGTATGTGTACA
LOC_Os11g17970
OsAffx.18909.1.S1_at--1008--7011Chr11:10080430..10080454 (25 bp)
GTACAGGAATGATCAGAGGATTGCT
LOC_Os11g17970
Target Sequence 
CCGTCGAGGTCAAGCGGAGGAGACTAGTGGCGTCGTCGTCGTCGTCGGCGATGATGTCCGTGTTCTGGCTGACGCCGCAG
TTCTTCCTCCTCGGCGTCGTCGACGTCACCTCCTTCGTGGGGCTCCTCGAGTTCTTCTCCAGCGAGGCGTCCGACGGGAT
GAAGTCCATCGGGAGCTCCATCTTCTACTGCATGCTCGGCATGGCGGCGTGGCTCAACACCATGCTCATCGAGCTCGTCA
ACCGCGTCACGCGGCGGCGCGGCGGCGGCGGGTGGCTGGACGGGGCGAACCTGAACGAGAGCAGGCTCGATCTCTTCTAC
TGGCTGGTGTCTGGCATCGAGCTGGTGGCGTTCATGGCGTACCTCCTGTTTGCGTGGAGGTATGTGTACAGGAATGATCA
GAGGATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis