Browse Element(s) Details


OsAffx.18913.1.S1_at

Description tigr:9639.m01670
TID=OsAffx.18913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18100OsAffx.31036.1.S1_at9/1111+10159517..10161186hypothetical protein
LOC_Os11g18110OsAffx.7138.1.S1_at8/1111+10163142..10169710POT family protein
LOC_Os11g18120OsAffx.29410.1.S1_at9/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.13325.1.S1_at2/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_x_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18130OsAffx.18913.1.S1_at11/1111+10182071..10183029hypothetical protein
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed
LOC_Os11g18160OsAffx.7140.1.S1_at11/1111+10199208..10201463hypothetical protein
LOC_Os11g18160OsAffx.13906.1.S1_at1/1111+10199208..10201463hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18913.1.S1_at--901--6111Chr11:10182952..10182976 (25 bp)
GAGTGTATGTGGCTCTCCCAATCCA
LOC_Os11g18130
OsAffx.18913.1.S1_at--866--6391Chr11:10182916..10182940 (25 bp)
GATCTGGTTAAATATACGGGAGCTC
LOC_Os11g18130
OsAffx.18913.1.S1_at--997--4431Chr11:10182606..10182630 (25 bp)
GCCATCAACGGCGTGACAACAGTAG
LOC_Os11g18130
OsAffx.18913.1.S1_at--657--9311Chr11:10182549..10182573 (25 bp)
TCCCGTCCTATATTTGGCCTTATGA
LOC_Os11g18130
OsAffx.18913.1.S1_at--722--231Chr11:10182540..10182564 (25 bp)
ATATTTGGCCTTATGAGAGCTCGAG
LOC_Os11g18130
OsAffx.18913.1.S1_at--1024--8551Chr11:10182444..10182468 (25 bp)
TGGATGTGGCTGATCTGGCCGTGGA
LOC_Os11g18130
OsAffx.18913.1.S1_at--592--4611Chr11:10182391..10182415 (25 bp)
GCGAGTAGATCCAGTCGGCGACCCG
LOC_Os11g18130
OsAffx.18913.1.S1_at--264--6391Chr11:10182153..10182309 (25 bp)
GATCTGGATTTGTGAAACGAGTAAA
LOC_Os11g18130
OsAffx.18913.1.S1_at--152--2291Chr11:10182131..10182155 (25 bp)
AAATGCTATAAATTGTGGTGCTCTA
LOC_Os11g18130
OsAffx.18913.1.S1_at--381--8671Chr11:10182118..10182142 (25 bp)
TGTGGTGCTCTATGGATCTGGCAAT
LOC_Os11g18130
OsAffx.18913.1.S1_at--1040--6391Chr11:10182104..10182128 (25 bp)
GATCTGGCAATTTGGGATTCACTTT
LOC_Os11g18130
Target Sequence 
GAGTGTATGTGGCTCTCCCAATCCACTCCCCTCCCAGATCTGGTTAAATATACGGGAGCTCGAGAAGGGCGCGGCGCGGC
AAAGGGGTAGGTGGCGTTGGCAGCAGGAGGGGAGGAGGCTGGTGGCGGTGCCGGCGGTAGCGCCCCACTCTCCTCCCCTC
TCAGATCTGGCCGAAGGAAAGGAGGCCATCAACGGCGTGACAACAGTAGAGGGGAGAGTGGCGGTGGCTCCCCTACTCCC
CTCCCGTCCTATATTTGGCCTTATGAGAGCTCGAGAAGGGGGCGGCGTGGCAAAGGGGGAGGTGGCGGTGGTGGCCGGTG
ACGACAAAGGGCAGGGGCTGCATAGGTGGATGTGGCTGATCTGGCCGTGGAGGCGATGGATCCAGCCATGGAGGCAGCGG
CGAGTAGATCCAGTCGGCGACCCGTCTCCCAGATCTGGATTTGTGAAACGAGTAAATGCTATAAATTGTGGTGCTCTATG
GATCTGGCAATTTGGGATTCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis