Browse Element(s) Details


OsAffx.18915.1.S1_at

Description tigr:9639.m01680
TID=OsAffx.18915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18194OsAffx.31037.1.S1_x_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.7141.1.S1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194Os.53034.1.A1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.18914.1.S1_x_at4/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18220OsAffx.17052.2.S1_at11/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.17052.1.S1_at2/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.12861.2.S1_x_at1/1111+10248433..10249301hypothetical protein
LOC_Os11g18230OsAffx.18915.1.S1_at11/1111+10253690..10253968hypothetical protein
LOC_Os11g18240OsAffx.22699.1.S1_x_at2/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18240OsAffx.26189.1.S1_at1/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18250NANA11+10265313..10267321retrotransposon protein, putative, unclassified
LOC_Os11g18260OsAffx.940.1.S1_x_at2/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.31845.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.47114.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18270NANA11+10273265..10274629hypothetical protein
LOC_Os11g18280Os.25754.2.S1_x_at2/1111+10276577..10277129hypothetical protein
LOC_Os11g18290OsAffx.20387.1.S1_x_at1/1111+10278082..10284483retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18915.1.S1_at--382--1711Chr11:10253912..10253936 (25 bp)
ACCACAATCTTCTTTGTCTACACGA
LOC_Os11g18230
OsAffx.18915.1.S1_at--633--10251Chr11:10253900..10253924 (25 bp)
TTTGTCTACACGACCAGTCCGTAGA
LOC_Os11g18230
OsAffx.18915.1.S1_at--682--5751Chr11:10253889..10253913 (25 bp)
GACCAGTCCGTAGAACCGAGCTTGG
LOC_Os11g18230
OsAffx.18915.1.S1_at--93--2611Chr11:10253876..10253900 (25 bp)
AACCGAGCTTGGAGAAAGCTACCGA
LOC_Os11g18230
OsAffx.18915.1.S1_at--347--2351Chr11:10253862..10253886 (25 bp)
AAAGCTACCGAGATGCCGTTCGGAA
LOC_Os11g18230
OsAffx.18915.1.S1_at--299--4511Chr11:10253848..10253872 (25 bp)
GCCGTTCGGAACGTAGTTGATATCT
LOC_Os11g18230
OsAffx.18915.1.S1_at--405--6651Chr11:10253833..10253857 (25 bp)
GTTGATATCTTTGGTCGTCGACACT
LOC_Os11g18230
OsAffx.18915.1.S1_at--1003--411Chr11:10253827..10253851 (25 bp)
ATCTTTGGTCGTCGACACTGGGAAA
LOC_Os11g18230
OsAffx.18915.1.S1_at--822--2291Chr11:10253803..10253827 (25 bp)
AAAGGAAGGCGGTGCCCGCAGATCC
LOC_Os11g18230
OsAffx.18915.1.S1_at--492--1291Chr11:10253784..10253808 (25 bp)
AGATCCGTCTACAGGCGGCAGCTCA
LOC_Os11g18230
OsAffx.18915.1.S1_at--991--8251Chr11:10253768..10253792 (25 bp)
GGCAGCTCAGGCAGATCAGAGACAT
LOC_Os11g18230
Target Sequence 
ACCACAATCTTCTTTGTCTACACGACCAGTCCGTAGAACCGAGCTTGGAGAAAGCTACCGAGATGCCGTTCGGAACGTAG
TTGATATCTTTGGTCGTCGACACTGGGAAAAAGGAAGGCGGTGCCCGCAGATCCGTCTACAGGCGGCAGCTCAGGCAGAT
CAGAGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis