Browse Element(s) Details


OsAffx.18918.1.S1_at

Description tigr:9639.m01688
TID=OsAffx.18918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1832011/11hypothetical protein
LOC_Os10g079661/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18290OsAffx.20387.1.S1_x_at1/1111+10278082..10284483retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18300OsAffx.18916.1.S1_at11/1111+10291297..10291992hypothetical protein
LOC_Os11g18310OsAffx.18917.1.S1_at3/1111+10299729..10300547Cycloartenol synthase, putative
LOC_Os11g18320OsAffx.18918.1.S1_at11/1111+10306734..10308857hypothetical protein
LOC_Os11g18320Os.55138.1.S1_x_at1/1111+10306734..10308857hypothetical protein
LOC_Os11g18330OsAffx.31038.1.S1_at10/1111+10311838..10312380hypothetical protein
LOC_Os11g18340NANA11+10320167..10320388lupeol synthase, putative
LOC_Os11g18350NANA11+10327058..10327950retrotransposon protein, putative, unclassified
LOC_Os11g18366OsAffx.18919.1.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.3.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.7143.1.A1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.1.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.18919.1.S1_s_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_x_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.1.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_at1/1111+10330124..10354479Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18918.1.S1_at--1--911Chr11:10306959..10306983 (25 bp)
AGGCGAAGTGCGCACATTGCCATCC
LOC_Os11g18320
OsAffx.18918.1.S1_at--367--571Chr11:10306980..10307004 (25 bp)
ATCCTCGTTGTCCAGAGCAACAGCG
LOC_Os11g18320
OsAffx.18918.1.S1_at--1005--1351Chr11:10306993..10307017 (25 bp)
AGAGCAACAGCGAGCGGCACCGCCA
LOC_Os11g18320
OsAffx.18918.1.S1_at--728--4411Chr11:10307014..10307038 (25 bp)
GCCAGCAACCTCAACTCGAAGTGTC
LOC_Os11g18320
OsAffx.18918.1.S1_at--1022--7751Chr11:10307055..10307079 (25 bp)
GGTGATCAACTGGTGCGCGATGATC
LOC_Os11g18320
OsAffx.18918.1.S1_at--667--7391Chr11:10307092..10307116 (25 bp)
GTGATGGCACGATTCCTGAAGCGGT
LOC_Os11g18320
OsAffx.18918.1.S1_at--86--3831Chr11:10307107..10307131 (25 bp)
CTGAAGCGGTTCGACCCGCTCTGGT
LOC_Os11g18320
OsAffx.18918.1.S1_at--886--9451Chr11:10307126..10307150 (25 bp)
TCTGGTTCTACGCACACGCTGCCGT
LOC_Os11g18320
OsAffx.18918.1.S1_at--581--7271Chr11:10307149..10307173 (25 bp)
GTCCAGGGTCTCTTGGTGGCCATTG
LOC_Os11g18320
OsAffx.18918.1.S1_at--830--71Chr11:10307170..10307194 (25 bp)
ATTGCCGCTGGGTTCAGGATGGACA
LOC_Os11g18320
OsAffx.18918.1.S1_at--743--3515Chr11:10307193..10307217 (25 bp)
CATGTCATTTTGGTACTTTCAACGC
LOC_Os11g18320
Target Sequence 
AGGCGAAGTGCGCACATTGCCATCCTCGTTGTCCAGAGCAACAGCGAGCGGCACCGCCAGCAACCTCAACTCGAAGTGTC
GCCATGGCGTGCTCGCGGTGATCAACTGGTGCGCGATGATCCCCACCGGCGTGGTGATGGCACGATTCCTGAAGCGGTTC
GACCCGCTCTGGTTCTACGCACACGCTGCCGTCCAGGGTCTCTTGGTGGCCATTGCCGCTGGGTTCAGGATGGACATGTC
ATTTTGGTACTTTCAACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis