Browse Element(s) Details


OsAffx.18919.1.S1_s_at

Description tigr:9639.m01694
TID=OsAffx.18919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lupeol synthase, 5 partial
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1836610/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18320OsAffx.18918.1.S1_at11/1111+10306734..10308857hypothetical protein
LOC_Os11g18320Os.55138.1.S1_x_at1/1111+10306734..10308857hypothetical protein
LOC_Os11g18330OsAffx.31038.1.S1_at10/1111+10311838..10312380hypothetical protein
LOC_Os11g18340NANA11+10320167..10320388lupeol synthase, putative
LOC_Os11g18350NANA11+10327058..10327950retrotransposon protein, putative, unclassified
LOC_Os11g18366OsAffx.18919.1.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.3.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.7143.1.A1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.1.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.18919.1.S1_s_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_x_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.1.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_at1/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18382OsAffx.24085.1.S1_at2/1111+10357014..10357944hypothetical protein
LOC_Os11g18382OsAffx.26303.1.S1_at2/1111+10357014..10357944hypothetical protein
LOC_Os11g18382OsAffx.31040.1.S1_at1/1111+10357014..10357944hypothetical protein
LOC_Os11g18400OsAffx.7144.1.S1_at11/1111+10359269..10360424hypothetical protein
LOC_Os11g18410OsAffx.18275.1.S1_x_at3/1111+10367744..10370513hypothetical protein
LOC_Os11g18410OsAffx.30486.1.S1_at1/1111+10367744..10370513hypothetical protein
LOC_Os11g18420NANA11+10374409..10376058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18430NANA11+10377367..10379170retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18919.1.S1_s_at--661--6871Chr11:10331053..10331077 (25 bp)
GTATATTGACAGTGGGAGGCCTCAT
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--903--8631Chr11:10331041..10331065 (25 bp)
TGGGAGGCCTCATGTAGTTCACACT
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--430--891Chr11:10331037..10331061 (25 bp)
AGGCCTCATGTAGTTCACACTGCGT
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--236--4291Chr11:10331034..10331058 (25 bp)
CCTCATGTAGTTCACACTGCGTGGG
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--926--6611Chr11:10331005..10331029 (25 bp)
GTTGGGCTTAATATATGCTGGACAG
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--770--8291Chr11:10331003..10331025 (23 bp)
GGCTTAATATATGCTGGACAGGTTG
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--495--3371Chr11:10330845..10330869 (25 bp)
CACCATTATACCGTGCGGCCAAAGA
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--705--9951Chr11:10330837..10330861 (25 bp)
TACCGTGCGGCCAAAGAATTAATCA
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--86--7311Chr11:10330833..10330857 (25 bp)
GTGCGGCCAAAGAATTAATCAACAT
LOC_Os11g18366
OsAffx.18919.1.S1_s_at--706--2751NONE
AAGAAATTCTTGGGAGCTTCAATTC
NONE
OsAffx.18919.1.S1_s_at--198--2511Chr11:10330387..10330411 (25 bp)
AACTTGTTCCCAATCTGGGCCCTAG
LOC_Os11g18366
Target Sequence 
GTATATTGACAGTGGGAGGCCTCATGTAGTTCACACTGCGTGGGGAATGTTGGGCTTAATATATGCTGGACAGGTTGAAT
TAGATCCAGCACCATTATACCGTGCGGCCAAAGAATTAATCAACATGCAGCTGGAGACAGGAGAATTTCCACAACAAGAA
ATTCTTGGGAGCTTCAATTCCTCCCTCTTCTTCAATTACACAAACTACAGGAACTTGTTCCCAATCTGGGCCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18919.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis