Browse Element(s) Details


OsAffx.7144.1.S1_at

Description tigr:9639.m01699
TID=OsAffx.7144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1840011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18366OsAffx.18919.1.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.3.S1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.7143.1.A1_at11/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.1.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.18919.1.S1_s_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366Os.23471.2.S1_x_at10/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.1.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_x_at2/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18366OsAffx.16572.4.S1_at1/1111+10330124..10354479Cycloartenol synthase, putative, expressed
LOC_Os11g18382OsAffx.24085.1.S1_at2/1111+10357014..10357944hypothetical protein
LOC_Os11g18382OsAffx.26303.1.S1_at2/1111+10357014..10357944hypothetical protein
LOC_Os11g18382OsAffx.31040.1.S1_at1/1111+10357014..10357944hypothetical protein
LOC_Os11g18400OsAffx.7144.1.S1_at11/1111+10359269..10360424hypothetical protein
LOC_Os11g18410OsAffx.18275.1.S1_x_at3/1111+10367744..10370513hypothetical protein
LOC_Os11g18410OsAffx.30486.1.S1_at1/1111+10367744..10370513hypothetical protein
LOC_Os11g18420NANA11+10374409..10376058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18430NANA11+10377367..10379170retrotransposon protein, putative, unclassified
LOC_Os11g18440NANA11+10379975..10380451retrotransposon protein, putative, unclassified
LOC_Os11g18450OsAffx.3761.1.S1_x_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18450OsAffx.19577.1.A1_at1/1111+10380870..10384750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7144.1.S1_at--441--3071Chr11:10359600..10359624 (25 bp)
AATCTTCGGTGGCTGCTTCATCGAC
LOC_Os11g18400
OsAffx.7144.1.S1_at--248--10111Chr11:10359819..10359842 (24 bp)
TATGATGGAACGTCTTGTCCCCAAC
LOC_Os11g18400
OsAffx.7144.1.S1_at--905--8691Chr11:10359833..10359857 (25 bp)
TGTCCCCAACTCATGTGCAAGCGAT
LOC_Os11g18400
OsAffx.7144.1.S1_at--1053--2671Chr11:10359851..10359875 (25 bp)
AAGCGATGGCTTTGTCTTTCGCACA
LOC_Os11g18400
OsAffx.7144.1.S1_at--787--2131Chr11:10359897..10359921 (25 bp)
ACAGTACCAGCAAGGCACGGCGTTA
LOC_Os11g18400
OsAffx.7144.1.S1_at--432--5511Chr11:10359934..10359958 (25 bp)
GAAAAGAACCTACCTCTAAGCTGGG
LOC_Os11g18400
OsAffx.7144.1.S1_at--1066--9631Chr11:10359984..10360008 (25 bp)
TCAGTTCGAGTATCCACCAGTGTCA
LOC_Os11g18400
OsAffx.7144.1.S1_at--225--5551Chr11:10360020..10360044 (25 bp)
GAAACCAATCCGAGCGAAGTCCTGT
LOC_Os11g18400
OsAffx.7144.1.S1_at--537--5331Chr11:10360035..10360059 (25 bp)
GAAGTCCTGTCGATCTATGAGTTGA
LOC_Os11g18400
OsAffx.7144.1.S1_at--55--6231Chr11:10360335..10360359 (25 bp)
GAGGCCTCCATGATTAATGCTGCTT
LOC_Os11g18400
OsAffx.7144.1.S1_at--843--10591Chr11:10360358..10360382 (25 bp)
TTCGGCTGGCATTTGTCTTGGCAAA
LOC_Os11g18400
Target Sequence 
AATCTTCGGTGGCTGCTTCATCGACTCTCGAAGCACGGTTCCAGACCTTTCTCCAGCAACTAGGCCAGCCCCACACAATC
CCAATTATGATGGAACGTCTTGTCCCCAACTCATGTGCAAGCGATGGCTTTGTCTTTCGCACAACCATACCCAGGCCTTT
CGCCACAGTACCAGCAAGGCACGGCGTTAAAGGCTGGGGGCGAAAAGAACCTACCTCTAAGCTGGGGGCTGAGGAAAGAA
CCCATCGCTCCTCAGTTCGAGTATCCACCAGTGTCAAAGTATTCGGGGAAACCAATCCGAGCGAAGTCCTGTCGATCTAT
GAGTTGACTATCAAAGCGACTCATGGCGAGGAAAACACCAAGGCAAAGTGGACCTACGAGGAGCCAAAAACTCAGCAAGA
CATGTGCAGCATTCGGCAAAAGCTGGGCGAATCGACAAGGAAGTATGCTAGGCGTGTTTCACAAGCAAGATGTCGAGTGC
AAGATATCACCGAGGCCTCCATGATTAATGCTGCTTCGGCTGGCATTTGTCTTGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis