Browse Element(s) Details


OsAffx.18926.1.S1_at

Description tigr:9639.m01734
TID=OsAffx.18926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1875011/11hypothetical protein
LOC_Os09g108102/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18730Os.27453.1.S1_at11/1111+10587515..10593743Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g18740OsAffx.7149.1.S1_at8/1111+10595759..10596947hypothetical protein
LOC_Os11g18740OsAffx.17242.1.S1_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18740Os.37711.3.S1_x_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_x_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18750OsAffx.18926.1.S1_at11/1111+10615324..10616193hypothetical protein
LOC_Os11g18760NANA11+10620323..10620881hypothetical protein
LOC_Os11g18770OsAffx.31047.1.S1_at10/1111+10626230..10635123PHD-finger family protein, expressed
LOC_Os11g18780OsAffx.20736.1.S1_at2/1111+10636453..10640667hypothetical protein
LOC_Os11g18780Os.27520.8.S1_x_at1/1111+10636453..10640667hypothetical protein
LOC_Os11g18780OsAffx.16528.1.S1_at1/1111+10636453..10640667hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18926.1.S1_at--94--4711Chr11:10615387..10615411 (25 bp)
GCGGCGTCCGTGTGCATGTGTGGCT
LOC_Os11g18750
OsAffx.18926.1.S1_at--600--791Chr11:10615402..10615426 (25 bp)
ATGTGTGGCTGCGAGGGCCAGGCGA
LOC_Os11g18750
OsAffx.18926.1.S1_at--39--911Chr11:10615421..10615445 (25 bp)
AGGCGACGGCGCTTCTTGACCGTGC
LOC_Os11g18750
OsAffx.18926.1.S1_at--1097--9571Chr11:10615434..10615458 (25 bp)
TCTTGACCGTGCGATGGTGGCGCGG
LOC_Os11g18750
OsAffx.18926.1.S1_at--1071--1631Chr11:10615462..10615486 (25 bp)
AGCGAGGGCGCGGTGAGGTCAGGCA
LOC_Os11g18750
OsAffx.18926.1.S1_at--566--1651Chr11:10615516..10615540 (25 bp)
AGCGCGCGGCCGTGCGACAGTGAGG
LOC_Os11g18750
OsAffx.18926.1.S1_at--449--1392Chr11:10616042..10616066 (25 bp)
AGACTGCCGGTGGTGGAACTCCGAC
LOC_Os11g18750
OsAffx.18926.1.S1_at--44--9192Chr11:10616046..10616070 (25 bp)
TGCCGGTGGTGGAACTCCGACAATC
LOC_Os11g18750
OsAffx.18926.1.S1_at--1047--7711Chr11:10616053..10616077 (25 bp)
GGTGGAACTCCGACAATCGGTATTC
LOC_Os11g18750
OsAffx.18926.1.S1_at--44--2531Chr11:10616058..10616082 (25 bp)
AACTCCGACAATCGGTATTCACCGG
LOC_Os11g18750
OsAffx.18926.1.S1_at--293--5611Chr11:10616064..10616088 (25 bp)
GACAATCGGTATTCACCGGCGACTC
LOC_Os11g18750
Target Sequence 
GCGGCGTCCGTGTGCATGTGTGGCTGCGAGGGCCAGGCGACGGCGCTTCTTGACCGTGCGATGGTGGCGCGGCCCAGCGA
GGGCGCGGTGAGGTCAGGCAGCGGCGGGGTGCTGCCATGCGGCGGCAGCAGCGCGCGGCCGTGCGACAGTGAGGCGGCCG
GTGGTGCGGCGCATGACGGCGCGGCAGGGCGAGGGCCAGGCGGCGCGGCCTGCGGCCATGGCATGGCGCGGCAGACTGCC
GGTGGTGGAACTCCGACAATCGGTATTCACCGGCGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis