Browse Element(s) Details


OsAffx.18936.1.S1_at

Description tigr:9639.m01770
TID=OsAffx.18936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ovule development aintegumenta-like protein BNM3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1906011/11AP2/EREBP transcription factor BABY BOOM, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19010NANA11+10816380..10817165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19020NANA11+10817680..10818980hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_at11/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_x_at10/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.3.S1_x_at3/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_at2/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_x_at1/1111+10823173..10833313hypothetical protein
LOC_Os11g19040OsAffx.18934.1.S1_x_at4/1111+10834093..10834353hypothetical protein
LOC_Os11g19050OsAffx.18935.1.S1_at11/1111+10837604..10838558hypothetical protein
LOC_Os11g19060OsAffx.18936.1.S1_at11/1111+10841051..10845913AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os11g19070OsAffx.18937.1.S1_at11/1111+10849054..10849819hypothetical protein
LOC_Os11g19080NANA11+10851577..10854656hypothetical protein
LOC_Os11g19100OsAffx.8750.1.A1_x_at2/1111+10864760..10867900retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18936.1.S1_at--1162--7911Chr11:10845382..10845406 (25 bp)
GGTTGGCAACTATGGTTCGCAGCAT
LOC_Os11g19060
OsAffx.18936.1.S1_at--957--811Chr11:10845421..10845445 (25 bp)
ATGGTCGCCAATTAGCATGCAGCCG
LOC_Os11g19060
OsAffx.18936.1.S1_at--120--2091Chr11:10845541..10845565 (25 bp)
ACATCATTTTAGTTCCTTGGGCTAC
LOC_Os11g19060
OsAffx.18936.1.S1_at--321--6291Chr11:10845590..10845614 (25 bp)
GATGTTCCAGACGTCACAGGTTTCG
LOC_Os11g19060
OsAffx.18936.1.S1_at--427--2131Chr11:10845605..10845629 (25 bp)
ACAGGTTTCGTTGATGCGCCTTCGA
LOC_Os11g19060
OsAffx.18936.1.S1_at--424--7371Chr11:10845636..10845660 (25 bp)
GTGACTCATACTCCTTCAGGTACAA
LOC_Os11g19060
OsAffx.18936.1.S1_at--316--2471Chr11:10845664..10845688 (25 bp)
AACAAATGGCTTTCATGGTCTCCCG
LOC_Os11g19060
OsAffx.18936.1.S1_at--1102--391Chr11:10845695..10845719 (25 bp)
ATCAGCTATGCTATGCCGGTTGCGA
LOC_Os11g19060
OsAffx.18936.1.S1_at--886--3211Chr11:10845731..10845755 (25 bp)
CAAGGTCAGGGCATCCATGGCTATG
LOC_Os11g19060
OsAffx.18936.1.S1_at--1043--51Chr11:10845776..10845800 (25 bp)
ATTGACACCACACATGACCTGTATG
LOC_Os11g19060
OsAffx.18936.1.S1_at--1029--7031Chr11:10845807..10845831 (25 bp)
GTAATGTGTACTACCTTTCCGAGGG
LOC_Os11g19060
Target Sequence 
GGTTGGCAACTATGGTTCGCAGCATTATGGTTACAATGGATGGTCGCCAATTAGCATGCAGCCGATCCCCTCGCAGTACG
CCAACGGCCAGCCCAGGGCATGGTTGAAACAAGAGCAGGACAGCTCTGTGGTTACAGCGGCGCAGAACCTGCACAATCTA
CATCATTTTAGTTCCTTGGGCTACACCCACAACTTCTTCCAGCAATCTGATGTTCCAGACGTCACAGGTTTCGTTGATGC
GCCTTCGAGGTCCAGTGACTCATACTCCTTCAGGTACAATGGAACAAATGGCTTTCATGGTCTCCCGGGTGGAATCAGCT
ATGCTATGCCGGTTGCGACAGCGGTGGACCAAGGTCAGGGCATCCATGGCTATGGAGAAGATGGTGTGGCAGGCATTGAC
ACCACACATGACCTGTATGGCAGCCGTAATGTGTACTACCTTTCCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis