Browse Element(s) Details


OsAffx.18938.1.S1_at

Description tigr:9639.m01780
TID=OsAffx.18938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1914011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19110NANA11+10874212..10881761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19120NANA11+10884826..10886991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19130Os.17538.1.S1_at11/1111+10888771..10893491expressed protein
LOC_Os11g19140OsAffx.18938.1.S1_at11/1111+10895761..10899895hypothetical protein
LOC_Os11g19140OsAffx.13740.1.S1_at1/1111+10895761..10899895hypothetical protein
LOC_Os11g19149Os.14771.1.S1_at4/1111+10903553..10903828NA
LOC_Os11g19149OsAffx.28888.1.S1_x_at1/1111+10903553..10903828NA
LOC_Os11g19160Os.52968.1.S1_at11/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19160OsAffx.2931.1.S1_at1/1111+10913022..10917118beta-D-xylosidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009825biological_processmultidimensional cell growth
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0016126biological_processsterol biosynthesis
GO:0042023biological_processDNA endoreduplication
GO:0005783cellular_componentendoplasmic reticulum
GO:0003838molecular_functionsterol 24-C-methyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18938.1.S1_at--838--9191Chr11:10896783..10896807 (25 bp)
TGCCAATCCCTGATTGTACCTTCGA
LOC_Os11g19140
OsAffx.18938.1.S1_at--527--4531Chr11:10896265..10896751 (25 bp)
GCCCCTGACGCTGTTATATTGGCGA
LOC_Os11g19140
OsAffx.18938.1.S1_at--99--4911Chr11:10896147..10896171 (25 bp)
GCTTCCTCGGTCAAACACTGGTTAG
LOC_Os11g19140
OsAffx.18938.1.S1_at--125--1531Chr11:10896120..10896144 (25 bp)
AGCAGTTCATCACCCAGACTGAAGC
LOC_Os11g19140
OsAffx.18938.1.S1_at--662--6711Chr11:10896078..10896102 (25 bp)
GTTCTTGGGAGAGACTGTACAGTAC
LOC_Os11g19140
OsAffx.18938.1.S1_at--727--2231Chr11:10896055..10896079 (25 bp)
ACAATTGACTTCTTTTTACCTGCGA
LOC_Os11g19140
OsAffx.18938.1.S1_at--679--2271Chr11:10896029..10896053 (25 bp)
AAATCCACAGTTGAAGTCGCTTGAG
LOC_Os11g19140
OsAffx.18938.1.S1_at--541--2851Chr11:10896016..10896040 (25 bp)
AAGTCGCTTGAGTTCCTCCATCTTG
LOC_Os11g19140
OsAffx.18938.1.S1_at--1137--411Chr11:10895997..10896021 (25 bp)
ATCTTGCCCCGGAAGGAAGCCTGAG
LOC_Os11g19140
OsAffx.18938.1.S1_at--689--5251Chr11:10895973..10895997 (25 bp)
GAATCTGCAGATTCCTTGCGACATC
LOC_Os11g19140
OsAffx.18938.1.S1_at--1022--2091Chr11:10895953..10895977 (25 bp)
ACATCGGTCGATTCCCTCGTGAAGG
LOC_Os11g19140
Target Sequence 
TGCCAATCCCTGATTGTACCTTCGACGCAGCCTACGCCCTCGACGCGACGTGCCACGCCCCTGACGCTGTTATATTGGCG
AAGGATATGGCAGAGGAATCGCCGTTGCCATGGTACCAGCCTCTTGATCCCAGCCAGCTCTCGCTCACACACTTCCAGTT
CACCCGTATCGGCCGCTTCCTCGGTCAAACACTGGTTAGTAAGCAGTTCATCACCCAGACTGAAGCAACTGAATTTTTAG
CATGTTCTTGGGAGAGACTGTACAGTACAATTGACTTCTTTTTACCTGCGAAAAATCCACAGTTGAAGTCGCTTGAGTTC
CTCCATCTTGCCCCGGAAGGAAGCCTGAGAATCTGCAGATTCCTTGCGACATCGGTCGATTCCCTCGTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis