Browse Element(s) Details


OsAffx.18959.1.S1_at

Description tigr:9639.m01916
TID=OsAffx.18959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2043011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20400OsAffx.31892.5.S1_at3/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.1.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.5.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20410NANA11+11790897..11791385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20420NANA11+11792062..11794570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20430OsAffx.18959.1.S1_at11/1111+11795183..11798247hypothetical protein
LOC_Os11g20430OsAffx.13772.1.S1_at1/1111+11795183..11798247hypothetical protein
LOC_Os11g20440Os.47114.1.S1_x_at2/1111+11806082..11809079transposon protein, putative, unclassified
LOC_Os11g20450NANA11+11811996..11818745retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20460NANA11+11820914..11827533retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18959.1.S1_at--239--5051Chr11:11795893..11795917 (25 bp)
GCAGCCTAATATGCCGGTGGTCGTT
LOC_Os11g20430
OsAffx.18959.1.S1_at--65--9751Chr11:11795887..11795911 (25 bp)
TAATATGCCGGTGGTCGTTCCGGCG
LOC_Os11g20430
OsAffx.18959.1.S1_at--97--3931Chr11:11795867..11795891 (25 bp)
CGGCGCTTGCACTCGAGCCGTTTGT
LOC_Os11g20430
OsAffx.18959.1.S1_at--912--1991Chr11:11795857..11795881 (25 bp)
ACTCGAGCCGTTTGTGCCGCGGGAA
LOC_Os11g20430
OsAffx.18959.1.S1_at--416--6551Chr11:11795677..11795701 (25 bp)
GATTTTGAGAACACGATGGCTGACC
LOC_Os11g20430
OsAffx.18959.1.S1_at--476--4051Chr11:11795664..11795688 (25 bp)
CGATGGCTGACCGAGTTTGTCGAAT
LOC_Os11g20430
OsAffx.18959.1.S1_at--210--8451Chr11:11795612..11795636 (25 bp)
GGCCAAACTCGAAAACACCATGATC
LOC_Os11g20430
OsAffx.18959.1.S1_at--470--4231Chr11:11795480..11795504 (25 bp)
CCGAGTTCCTCGCAGAGATCTCGAG
LOC_Os11g20430
OsAffx.18959.1.S1_at--7--4011Chr11:11795359..11795383 (25 bp)
CGTCGATCGAGCCAGTACACCAGAG
LOC_Os11g20430
OsAffx.18959.1.S1_at--856--5711Chr11:11795252..11795276 (25 bp)
GACTCCCACGGAGATTGATGGTCTT
LOC_Os11g20430
OsAffx.18959.1.S1_at--293--10771Chr11:11795238..11795262 (25 bp)
TTGATGGTCTTGAGCAGTCGATGGC
LOC_Os11g20430
Target Sequence 
GCAGCCTAATATGCCGGTGGTCGTTCCGGCGCTTGCACTCGAGCCGTTTGTGCCGCGGGAAGAGGCAGATTTTGAGAACA
CGATGGCTGACCGAGTTTGTCGAATCCAATATTGGAGGACGAAGCTCGAGATGGCCAAACTCGAAAACACCATGATCGAG
GTGAAGAAGGATCAGGCTGTGGAAACTCTTCGAGGTCGCGAGGTATGGTTCAACTCGTACCTCAAGAGCTGCTGTACGGC
GATGGCGAGGGTCTGCAAGGAGCTCCGAGTTCCTCGCAGAGATCTCGAGGAGTCGGCAGCCGGATATATCTCATGGTTGA
ATGGGGCTTGTGCACAGCTCGAAGGGATCGGCAAACGTATCGACGAGGCCCTAAAGCAGGAGTGTCGTCGATCGAGCCAG
TACACCAGAGGACATGTGCTGGCCTGCATCCGAGATCACCGCCCGCAGCAGCACCTCGAGTTCCTTCACGAAGGGTTCTC
ACGTTCTCGGAGGACTCCCACGGAGATTGATGGTCTTGAGCAGTCGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis