Browse Element(s) Details


OsAffx.18975.1.S1_at

Description tigr:9639.m02076
TID=OsAffx.18975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2319011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23160NANA11+12845325..12847412hypothetical protein
LOC_Os11g23170Os.18880.1.S1_at3/1111+12853173..12861291Mitochondrial carrier protein, expressed
LOC_Os11g23180OsAffx.18974.1.S1_at11/1111+12865611..12866706hypothetical protein
LOC_Os11g23190OsAffx.18975.1.S1_at11/1111+12870036..12872507hypothetical protein
LOC_Os11g23200NANA11+12874002..12878337retrotransposon, putative, centromere-specific
LOC_Os11g23210Os.49364.1.A1_x_at2/1111+12881165..12883525hypothetical protein
LOC_Os11g23210OsAffx.5382.1.S1_at1/1111+12881165..12883525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18975.1.S1_at--992--2031Chr11:12872020..12872044 (25 bp)
ACTTCAACACAAATCTTTCCGCAAC
LOC_Os11g23190
OsAffx.18975.1.S1_at--315--10291Chr11:12872035..12872059 (25 bp)
TTTCCGCAACCGCATCAAAGGTGGA
LOC_Os11g23190
OsAffx.18975.1.S1_at--366--371Chr11:12872048..12872072 (25 bp)
ATCAAAGGTGGATTCGCCTCGTGCC
LOC_Os11g23190
OsAffx.18975.1.S1_at--720--211Chr11:12872081..12872105 (25 bp)
ATTTGATCTGAATTCACCTCCTGTC
LOC_Os11g23190
OsAffx.18975.1.S1_at--1046--9671Chr11:12872094..12872118 (25 bp)
TCACCTCCTGTCATGGATTCCATAG
LOC_Os11g23190
OsAffx.18975.1.S1_at--391--2651Chr11:12872147..12872171 (25 bp)
AATTGGTTTCGGTGAACCTCCACTG
LOC_Os11g23190
OsAffx.18975.1.S1_at--935--791Chr11:12872236..12872260 (25 bp)
ATGTGGAAGGCCAGTCTGTCTCTAC
LOC_Os11g23190
OsAffx.18975.1.S1_at--584--3452Chr11:12872247..12872271 (25 bp)
CAGTCTGTCTCTACCATGCAAATTG
LOC_Os11g23190
OsAffx.18975.1.S1_at--531--2971Chr11:12872280..12872304 (25 bp)
AATGGATCAAGTTTCTCACAGGCAG
LOC_Os11g23190
OsAffx.18975.1.S1_at--853--6231Chr11:12872304..12872328 (25 bp)
GATGGCATCATGACCCATGTTCAGA
LOC_Os11g23190
OsAffx.18975.1.S1_at--689--2811Chr11:12872409..12872433 (25 bp)
AAGATTTTCCATGAAGGCTTCTCCA
LOC_Os11g23190
Target Sequence 
ACTTCAACACAAATCTTTCCGCAACCGCATCAAAGGTGGATTCGCCTCGTGCCGTGGTTTCATTTGATCTGAATTCACCT
CCTGTCATGGATTCCATAGAGTCAAAAACATGTCATACTAAAACTTTAATTGGTTTCGGTGAACCTCCACTGTCAGCCAC
AAATAAACAACAAGAAAATGGTAAAAAGGGAAGTTCTCTGAAACATAGTGAGTTCCATGTGGAAGGCCAGTCTGTCTCTA
CCATGCAAATTGGCACCATAAATGGATCAAGTTTCTCACAGGCAGATGGCATCATGACCCATGTTCAGAGAATACAACAT
CCTCAAACTAACATACTTGATACCAGTAAGGATGCTGCCAAAAAGCCTAGCTTCATCAGAATTTTTGGTAAGATTTTCCA
TGAAGGCTTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis