Browse Element(s) Details


OsAffx.19030.1.S1_at

Description tigr:9639.m02383
TID=OsAffx.19030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2671011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26670NANA11+14773754..14779883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26680OsAffx.31287.1.S1_at1/1111+14782818..14786348transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26690NANA11+14787007..14787324hypothetical protein
LOC_Os11g26700OsAffx.19421.1.S1_at11/1111+14789156..14792110hypothetical protein
LOC_Os11g26700OsAffx.18924.2.S1_x_at1/1111+14789156..14792110hypothetical protein
LOC_Os11g26710OsAffx.19030.1.S1_at11/1111+14794685..14795076hypothetical protein
LOC_Os11g26720OsAffx.7212.1.S1_at11/1111+14801716..14804775hypothetical protein
LOC_Os11g26720Os.53874.1.S1_at1/1111+14801716..14804775hypothetical protein
LOC_Os11g26730OsAffx.19031.1.S1_at11/1111+14816284..14817059hypothetical protein
LOC_Os11g26730OsAffx.23391.1.S1_at1/1111+14816284..14817059hypothetical protein
LOC_Os11g26750Os.9820.1.S1_at11/1111+14820022..14821260Dehydrin RAB 16D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19030.1.S1_at--347--9071Chr11:14795007..14795031 (25 bp)
TGCTTGGTTCTTCTGCTGTGCTCTG
LOC_Os11g26710
OsAffx.19030.1.S1_at--439--9491Chr11:14794996..14795020 (25 bp)
TCTGCTGTGCTCTGCCATTCCTGCA
LOC_Os11g26710
OsAffx.19030.1.S1_at--170--2412Chr11:14794878..14794994 (25 bp)
AAACAAGAGATATAGGTCAAACCAC
LOC_Os11g26710
OsAffx.19030.1.S1_at--199--2271Chr11:14794860..14794884 (25 bp)
AAACCACAAATGAGATCCAAAAAGA
LOC_Os11g26710
OsAffx.19030.1.S1_at--383--9191Chr11:14794845..14794869 (25 bp)
TCCAAAAAGATATGTCGACCGGTGT
LOC_Os11g26710
OsAffx.19030.1.S1_at--1115--7191Chr11:14794832..14794856 (25 bp)
GTCGACCGGTGTGAAAAACAAGAAT
LOC_Os11g26710
OsAffx.19030.1.S1_at--169--8851Chr11:14794781..14794805 (25 bp)
TGATCACTGTGTTCAAACCCCCGGT
LOC_Os11g26710
OsAffx.19030.1.S1_at--523--4731Chr11:14794730..14794754 (25 bp)
GCTGTGCTATCCAACTATTGGGCTG
LOC_Os11g26710
OsAffx.19030.1.S1_at--463--4871Chr11:14794725..14794749 (25 bp)
GCTATCCAACTATTGGGCTGTGCAT
LOC_Os11g26710
OsAffx.19030.1.S1_at--157--3251Chr11:14794719..14794743 (25 bp)
CAACTATTGGGCTGTGCATACCAGA
LOC_Os11g26710
OsAffx.19030.1.S1_at--814--10231Chr11:14794715..14794739 (25 bp)
TATTGGGCTGTGCATACCAGAATGC
LOC_Os11g26710
Target Sequence 
TGCTTGGTTCTTCTGCTGTGCTCTGCCATTCCTGCACAAACAAGAGATATAGGTCAAACCACAAATGAGATCCAAAAAGA
TATGTCGACCGGTGTGAAAAACAAGAATAGCTTTGGAGAACTTTATTATAAACCTGATCACTGTGTTCAAACCCCCGGTG
GGTTCTATTGCTGTGCACTGGACCAGCTGTGCTATCCAACTATTGGGCTGTGCATACCAGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis