Browse Element(s) Details


OsAffx.19050.1.S1_at

Description tigr:9639.m02559
TID=OsAffx.19050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2837011/11hypothetical protein
LOC_Os05g382901/11Protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28350Os.47963.1.S1_at11/1111+15807906..15810405CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os11g28360Os.54773.1.S1_at11/1111+15815169..15819625Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
LOC_Os11g28370OsAffx.19050.1.S1_at11/1111+15834004..15836835hypothetical protein
LOC_Os11g28380OsAffx.19051.1.S1_at11/1111+15838441..15838878hypothetical protein
LOC_Os11g28390OsAffx.21330.1.S1_at1/1111+15840149..15841075hypothetical protein
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19050.1.S1_at--142--3991Chr11:15836469..15836493 (25 bp)
CGGGCTCGACATCTTCCGGCAAGCA
LOC_Os11g28370
OsAffx.19050.1.S1_at--272--8951Chr11:15836512..15836533 (22 bp)
TGACGGCCATGATTGCTCCCATATT
LOC_Os11g28370
OsAffx.19050.1.S1_at--79--9332Chr11:15836528..15836578 (25 bp)
TCCCATATTGCACACATGAGCCTAT
LOC_Os11g28370
OsAffx.19050.1.S1_at--212--8931Chr11:15836570..15836594 (25 bp)
TGAGCCTATGGCCAATCCAGCAAAT
LOC_Os11g28370
OsAffx.19050.1.S1_at--580--871Chr11:15836577..15836601 (25 bp)
ATGGCCAATCCAGCAAATGCGCGTC
LOC_Os11g28370
OsAffx.19050.1.S1_at--260--2291Chr11:15836591..15836615 (25 bp)
AAATGCGCGTCGAGCTGTGTGCTAA
LOC_Os11g28370
OsAffx.19050.1.S1_at--1068--4071Chr11:15836601..15836625 (25 bp)
CGAGCTGTGTGCTAAGCGGAGCCCA
LOC_Os11g28370
OsAffx.19050.1.S1_at--120--3411Chr11:15836639..15836663 (25 bp)
CAGCATCGGCGTGGAAGGACGCCAT
LOC_Os11g28370
OsAffx.19050.1.S1_at--570--1871Chr11:15836698..15836722 (25 bp)
ACGAGCTGGGCCAAGAGCAGTTCGA
LOC_Os11g28370
OsAffx.19050.1.S1_at--44--7831Chr11:15836739..15836763 (25 bp)
GGTCAAGGATTTTTCGATCTGCTTC
LOC_Os11g28370
OsAffx.19050.1.S1_at--579--6411Chr11:15836754..15836778 (25 bp)
GATCTGCTTCACTAACGAGGTAGGA
LOC_Os11g28370
Target Sequence 
CGGGCTCGACATCTTCCGGCAAGCACCATTTCTTTGGCGTCTTTGACGGCCATGATTGCTCCCATATTGCACACATGAGC
CTATGGCCAATCCAGCAAATGCGCGTCGAGCTGTGTGCTAAGCGGAGCCCAGCGGCGGCGGCAGCAGCATCGGCGTGGAA
GGACGCCATGGAGAAAGGGTTCGCGCGGATGGACGATGAGGCGACGAGCTGGGCCAAGAGCAGTTCGAGGGAGGAGTTCG
AGCAGGTCAAGGATTTTTCGATCTGCTTCACTAACGAGGTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis