Browse Element(s) Details


OsAffx.19070.1.S1_at

Description tigr:9639.m02676
TID=OsAffx.19070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g295809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29540OsAffx.13772.1.S1_x_at1/1111+16640249..16641487hypothetical protein
LOC_Os11g29550OsAffx.19069.1.S1_at11/1111+16642440..16644195hypothetical protein
LOC_Os11g29560Os.50255.1.S1_at3/1111+16646891..16649818retrotransposon protein, putative, unclassified
LOC_Os11g29570NANA11+16650148..16655953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29580OsAffx.19070.1.S1_at9/1111+16660016..16660264hypothetical protein
LOC_Os11g29589NANA11+16664185..16664436NA
LOC_Os11g29600OsAffx.23573.1.S1_s_at3/1111+16666295..16666629RING zinc finger protein, putative
LOC_Os11g29610NANA11+16668206..16672462retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29620OsAffx.31204.1.S1_at9/1111+16676622..16677206hypothetical protein
LOC_Os11g29630NANA11+16677942..16679530expressed protein
LOC_Os11g29640Os.14491.2.S1_x_at2/1111+16681654..16682648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29640Os.47463.1.S1_x_at2/1111+16681654..16682648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g29650NANA11+16682764..16685354transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19070.1.S1_at--980--3951Chr11:16660131..16660155 (25 bp)
CGGTCTCCAGACGAAGACGGGCAGC
LOC_Os11g29580
OsAffx.19070.1.S1_at--748--9491NONE
TCTCCAGACGAAGACGGGCAGCGTT
NONE
OsAffx.19070.1.S1_at--907--3811NONE
CTCCAGACGAAGACGGGCAGCGTTC
NONE
OsAffx.19070.1.S1_at--383--7511Chr11:16660099..16660123 (25 bp)
GTGGAGGGTGATGCCGTGGAGCCGG
LOC_Os11g29580
OsAffx.19070.1.S1_at--284--5311Chr11:16660073..16660097 (25 bp)
GAAGGAGAAGATGACGACAGCTGCC
LOC_Os11g29580
OsAffx.19070.1.S1_at--577--5631Chr11:16660058..16660082 (25 bp)
GACAGCTGCCGCACCGATAAGGAAT
LOC_Os11g29580
OsAffx.19070.1.S1_at--717--2151Chr11:16660057..16660081 (25 bp)
ACAGCTGCCGCACCGATAAGGAATA
LOC_Os11g29580
OsAffx.19070.1.S1_at--1000--1591Chr11:16660055..16660079 (25 bp)
AGCTGCCGCACCGATAAGGAATAGT
LOC_Os11g29580
OsAffx.19070.1.S1_at--1082--4771Chr11:16660054..16660078 (25 bp)
GCTGCCGCACCGATAAGGAATAGTA
LOC_Os11g29580
OsAffx.19070.1.S1_at--615--4511Chr11:16660051..16660075 (25 bp)
GCCGCACCGATAAGGAATAGTAGCT
LOC_Os11g29580
OsAffx.19070.1.S1_at--155--1771Chr11:16660046..16660070 (25 bp)
ACCGATAAGGAATAGTAGCTGGCCG
LOC_Os11g29580
Target Sequence 
CGGTCTCCAGACGAAGACGGGCAGCGTTCGGGGTGGAGGGTGATGCCGTGGAGCCGGGGAAGGAGAAGATGACGACAGCT
GCCGCACCGATAAGGAATAGTAGCTGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis