Browse Element(s) Details


OsAffx.19076.1.S1_at

Description tigr:9639.m02708
TID=OsAffx.19076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2994010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29900Os.19165.1.S1_at11/1111+16877037..16880186expressed protein
LOC_Os11g29910OsAffx.7252.1.S1_at11/1111+16881166..16881880Plastocyanin-like domain containing protein
LOC_Os11g29920OsAffx.31213.1.S1_x_at11/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29920OsAffx.31213.3.S1_s_at6/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29930OsAffx.19075.1.S1_x_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29930OsAffx.19075.1.S1_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified
LOC_Os11g29970OsAffx.31214.1.S1_at11/1111+16909269..16914755NB-ARC domain containing protein, expressed
LOC_Os11g29980OsAffx.19077.1.S1_at11/1111+16922819..16926281NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19076.1.S1_at--433--4051Chr11:16897898..16897922 (25 bp)
CGATCTAACTGGCAGCGTGCGAGCA
LOC_Os11g29940
OsAffx.19076.1.S1_at--961--3911Chr11:16897906..16897930 (25 bp)
CTGGCAGCGTGCGAGCAGTTCGACC
LOC_Os11g29940
OsAffx.19076.1.S1_at--776--6051Chr11:16897974..16897994 (21 bp)
GAGATTCCCATCGATTTGAGGCCCA
LOC_Os11g29940
OsAffx.19076.1.S1_at--103--211NONE
ATTTGAGGCCCACTCCAATAGCCAA
NONE
OsAffx.19076.1.S1_at--285--3051Chr11:16898807..16898831 (25 bp)
AATCTCGCCGCTACGCCGTTGGGAA
LOC_Os11g29940
OsAffx.19076.1.S1_at--13--10851Chr11:16898825..16898849 (25 bp)
TTGGGAAGCCAACCACGCTTGCGGA
LOC_Os11g29940
OsAffx.19076.1.S1_at--1088--3191Chr11:16898869..16898893 (25 bp)
CAATGCAACCATCCACCAATGTTTC
LOC_Os11g29940
OsAffx.19076.1.S1_at--1155--571Chr11:16898879..16898903 (25 bp)
ATCCACCAATGTTTCCGCTAGAGGA
LOC_Os11g29940
OsAffx.19076.1.S1_at--1121--6831Chr11:16898907..16898931 (25 bp)
GTTTCTGTGTAGAGGAGGTACTGAC
LOC_Os11g29940
OsAffx.19076.1.S1_at--769--8271Chr11:16899059..16899083 (25 bp)
GGCATGTGTCGCAGACCTTGAGGTC
LOC_Os11g29940
OsAffx.19076.1.S1_at--160--10831Chr11:16899139..16899163 (25 bp)
TTGTCGGCAGCGTTGAGGTTCAGCC
LOC_Os11g29940
Target Sequence 
CGATCTAACTGGCAGCGTGCGAGCAGTTCGACCGGCGGCGTACGAGCAATCCGACTGGCGGCGACAGGACTACGTCGAGA
TTCCCATCGATTTGAGGCCCACTCCAATAGCCAACCTGCTCCAATCTCGCCGCTACGCCGTTGGGAAGCCAACCACGCTT
GCGGACGTCGTCGCCGACGAGCCCCAATGCAACCATCCACCAATGTTTCCGCTAGAGGAAGAGTTTCTGTGTAGAGGAGG
TACTGACGGGGAGCCAAGCGGCCGCCGGCGGTGGAGGAGAGCTCGAACGCGGCCCCTCCGAGAGCGACGCTGCCCGGCAG
GTGCGTGCAACAAGGGTGGGAGTCGAGGTCGCGGGAACCGGCGCACGTCGTCGCGGCATGTGTCGCAGACCTTGAGGTCG
CCGTCGTCAGGTGTCGTTGGCGGGAGCTCGTGGAGGAGCACGAACCTCCCCGCGTTGTCGGCAGCGTTGAGGTTCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis