Browse Element(s) Details


OsAffx.31214.1.S1_at

Description tigr:9639.m02710
TID=OsAffx.31214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2997011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29920OsAffx.31213.1.S1_x_at11/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29920OsAffx.31213.3.S1_s_at6/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29930OsAffx.19075.1.S1_x_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29930OsAffx.19075.1.S1_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified
LOC_Os11g29970OsAffx.31214.1.S1_at11/1111+16909269..16914755NB-ARC domain containing protein, expressed
LOC_Os11g29980OsAffx.19077.1.S1_at11/1111+16922819..16926281NB-ARC domain containing protein
LOC_Os11g29990OsAffx.31215.1.S1_at11/1111+16931533..16935561NB-ARC domain containing protein
LOC_Os11g30000Os.46012.2.S1_x_at7/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.27088.1.A1_x_at4/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.46012.3.S1_x_at3/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.30217.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.54691.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.10222.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31214.1.S1_at--1147--3311Chr11:16909899..16909923 (25 bp)
CACTTCTGCATTACCTGTCTATTTG
LOC_Os11g29970
OsAffx.31214.1.S1_at--356--1211Chr11:16909821..16909845 (25 bp)
AGTTAGACATTCATAGCTGCCCTGG
LOC_Os11g29970
OsAffx.31214.1.S1_at--892--6691Chr11:16909781..16909805 (25 bp)
GTTCCTCCCATCACTTTTGAAATTA
LOC_Os11g29970
OsAffx.31214.1.S1_at--714--3551Chr11:16909696..16909720 (25 bp)
CATCTCTGGGATCCACTTCTTAAAG
LOC_Os11g29970
OsAffx.31214.1.S1_at--780--8811Chr11:16909653..16909677 (25 bp)
TGTTGAATGGCATTGACCACCCCTG
LOC_Os11g29970
OsAffx.31214.1.S1_at--796--8311Chr11:16909629..16909653 (25 bp)
GGCTCAACTGCATATCAATTCTCTG
LOC_Os11g29970
OsAffx.31214.1.S1_at--293--691Chr11:16909597..16909621 (25 bp)
ATGACGAACTTATCTCTTGAGCCAA
LOC_Os11g29970
OsAffx.31214.1.S1_at--777--6631Chr11:16909539..16909563 (25 bp)
GTTGTGCTAATCTCCAATACTGTGA
LOC_Os11g29970
OsAffx.31214.1.S1_at--95--10191Chr11:16909454..16909478 (25 bp)
TATACATAGTTTGCTCCCACGGCAG
LOC_Os11g29970
OsAffx.31214.1.S1_at--575--9051Chr11:16909428..16909452 (25 bp)
TGCAGTCTGCTCTGGATCTTCGTGA
LOC_Os11g29970
OsAffx.31214.1.S1_at--1141--1831Chr11:16909300..16909428 (25 bp)
ACGCTCCAGCTTCGTTTATCGATGA
LOC_Os11g29970
Target Sequence 
CACTTCTGCATTACCTGTCTATTTGGTATAATACACTGATGGACAACCCTACCATTCCTGTTTTACATAACCTAAAGGAG
TTAGACATTCATAGCTGCCCTGGCATAACAAAACTTCCGTTCCTCCCATCACTTTTGAAATTACGGATATGCAGATGTCC
AGACTTAGATGTAATTGGCTCACTCCCCTCACTTAACACCTTCCATCTCTGGGATCCACTTCTTAAAGATAAGGTATTGT
GCAGGCTGTTGAATGGCATTGACCACCCCTGGCTCAACTGCATATCAATTCTCTGTGAAACAATGACGAACTTATCTCTT
GAGCCAAAAAGACTGTCTTCCCTGAGGAAGATCCTATTAAGTTGTGCTAATCTCCAATACTGTGATGGCCTTTCTGGCCT
CACTTTCCTTGAAGAGATAAAGATCTGGAGATGCCCAAAGCTCCCTATACATAGTTTGCTCCCACGGCAGCTGCAGTCTG
CTCTGGATCTTCGTGACGCTCCAGCTTCGTTTATCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis