Browse Element(s) Details


OsAffx.19085.1.S1_at

Description tigr:9639.m02747
TID=OsAffx.19085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3037011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30360Os.9072.1.S1_at11/1111+17123166..17123706expressed protein
LOC_Os11g30370OsAffx.19085.1.S1_at11/1111+17128885..17130188expressed protein
LOC_Os11g30370OsAffx.2442.1.S1_x_at1/1111+17128885..17130188expressed protein
LOC_Os11g30380NANA11+17137848..17138267SBP domain containing protein
LOC_Os11g30390OsAffx.29313.1.S1_at1/1111+17155172..17162200transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19085.1.S1_at--386--4251Chr11:17129993..17130017 (25 bp)
CCGGAAACGGCTGGATGGTCATAAC
LOC_Os11g30370
OsAffx.19085.1.S1_at--414--2151Chr11:17129951..17129975 (25 bp)
ACAGCATGATGCATTGAACCCTAGG
LOC_Os11g30370
OsAffx.19085.1.S1_at--1125--10071Chr11:17129930..17129954 (25 bp)
TAGGAGTTTCCTTCCGTATCATCAA
LOC_Os11g30370
OsAffx.19085.1.S1_at--194--5252Chr04:25543115..25543151 (25 bp)
GAATCAGTTTTCAGTCTACCCGCAA
NONE
OsAffx.19085.1.S1_at--1120--9951Chr11:17129355..17129379 (25 bp)
TACCCGCAAACATTTCCGATAGCTG
LOC_Os11g30370
OsAffx.19085.1.S1_at--314--10471Chr11:17129313..17129337 (25 bp)
TTAATGCGTCCGCTTGATCGTCACC
LOC_Os11g30370
OsAffx.19085.1.S1_at--610--9591Chr11:17129274..17129298 (25 bp)
TCATTCTCAGGGACCTTCCGGGAAC
LOC_Os11g30370
OsAffx.19085.1.S1_at--377--5391Chr11:17129248..17129272 (25 bp)
GAAGCAGTTCCCCTTTATGCAAGAT
LOC_Os11g30370
OsAffx.19085.1.S1_at--70--9811Chr11:17128973..17128997 (25 bp)
TAACCACCGCATTCGCATCAGATGG
LOC_Os11g30370
OsAffx.19085.1.S1_at--136--391Chr11:17128945..17128969 (25 bp)
ATCAGTTGCCGGTGACCATGTCTTG
LOC_Os11g30370
OsAffx.19085.1.S1_at--665--3611Chr11:17128924..17128948 (25 bp)
CTTGGTTCCTGCTGTCACATATGAA
LOC_Os11g30370
Target Sequence 
CCGGAAACGGCTGGATGGTCATAACAGGCGTCGAAGAAAGCCACAGCATGATGCATTGAACCCTAGGAGTTTCCTTCCGT
ATCATCAAGCGAATCAGTTTTCAGTCTACCCGCAAACATTTCCGATAGCTGATCAGAACGCCGACGCCTTAATGCGTCCG
CTTGATCGTCACCCTCCCTTCTCCATCTCATTCTCAGGGACCTTCCGGGAACCGAAGCAGTTCCCCTTTATGCAAGATGG
CGGGAGCGGCCTCGGCGCAGCGCGCCACGATCTCCTGCGGCCCTTCTCTTCCCCAGAAGATGGAGCCAACATTACCACAA
CCCGCAGCGCATGCAACGGCGTCCCCCACGGGCTGGACCCGGAGTGTGCTCTCTCTCTTCTGTCATCGTCGCTGCATCCC
TCCCCCGCTGCCGGCATCTCCAGCGCAACAGCTCCACCGCAGTTCGCCCCCTCTTCTTTCAGCAGAATCGCCGCCTCGTC
GCAAGCCGTAACCACCGCATTCGCATCAGATGGAGGATCAGTTGCCGGTGACCATGTCTTGGTTCCTGCTGTCACATATG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis