Browse Element(s) Details


Os.54912.1.S1_at

Description gb:AK107085.1
DB_XREF= gi:32992294
TID=Os.54912.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G03, full insert sequence.
FL= gb:AK107085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3035011/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30270NANA11+17087755..17090316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30280OsAffx.31222.2.S1_x_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30280OsAffx.31222.2.S1_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30290OsAffx.31223.1.S1_at11/1111+17093777..17094166PHF5-like protein
LOC_Os11g30300OsAffx.19084.1.S1_at4/1111+17096207..17096593hypothetical protein
LOC_Os11g30310OsAffx.11451.4.S1_x_at1/1111+17097206..17098828Reticuline oxidase precursor, putative
LOC_Os11g30320OsAffx.31224.1.S1_at7/1111+17101382..17102759hypothetical protein
LOC_Os11g30320OsAffx.13325.1.S1_at1/1111+17101382..17102759hypothetical protein
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30360Os.9072.1.S1_at11/1111+17123166..17123706expressed protein
LOC_Os11g30370OsAffx.19085.1.S1_at11/1111+17128885..17130188expressed protein
LOC_Os11g30370OsAffx.2442.1.S1_x_at1/1111+17128885..17130188expressed protein
LOC_Os11g30380NANA11+17137848..17138267SBP domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54912.1.S1_at--510--1711Chr11:17114444..17114468 (25 bp)
ACCACGCCAGGCTCGCTGGCTGGAA
LOC_Os11g30350
Os.54912.1.S1_at--515--4851Chr11:17114086..17114110 (25 bp)
GCTAGCTGAGTTCCAAGAGTTGAAG
LOC_Os11g30350
Os.54912.1.S1_at--946--6031Chr11:17114079..17114103 (25 bp)
GAGTTCCAAGAGTTGAAGGTTTACA
LOC_Os11g30350
Os.54912.1.S1_at--654--991Chr11:17114063..17114087 (25 bp)
AGGTTTACAAAGTGATCTTTCAGAA
LOC_Os11g30350
Os.54912.1.S1_at--929--10511Chr11:17114045..17114069 (25 bp)
TTCAGAAAGCTTAGACGGGCCGGGC
LOC_Os11g30350
Os.54912.1.S1_at--894--2351Chr11:17114012..17114036 (25 bp)
AAAGCTGTATGGTCATGAAGGCTGG
LOC_Os11g30350
Os.54912.1.S1_at--45--2951Chr11:17113995..17114019 (25 bp)
AAGGCTGGGCTGAGCTGGGCCAAAA
LOC_Os11g30350
Os.54912.1.S1_at--1130--8431Chr11:17113978..17114002 (25 bp)
GGCCAAAAGCCCAAGATGTATGATG
LOC_Os11g30350
Os.54912.1.S1_at--279--5211Chr11:17113954..17113978 (25 bp)
GAATATCCTTAGATGGGCTTGGGCT
LOC_Os11g30350
Os.54912.1.S1_at--208--7591Chr11:17113940..17113964 (25 bp)
GGGCTTGGGCTAGGCCCATCAGAAA
LOC_Os11g30350
Os.54912.1.S1_at--772--7711Chr11:17113914..17113938 (25 bp)
GGGTGGAAATGAAACCATTGTGTAT
LOC_Os11g30350
Target Sequence 
ACCACGCCAGGCTCGCTGGCTGGAAGGGCCTGAAGCTGTACCTGGACTACTCCGGTAGCTCCGGCGTCCGTAGGAAGAGC
GTGGTTCCCAGCGTCGGGGTCGGGGGCGGCGGCGGCGGCCGCAGCAGTGGCGGCAGCACGGCGGTGATGGACCTGTCGAG
CCGGGACGCGTGGGCGGCGGCATACAGCGGTGTGGCCGCCGGCGCCGCCCTGGTCACCGGCCTCGGCCTGATGGCCTATC
TCCGGAGAGCTAGCTGAGTTCCAAGAGTTGAAGGTTTACAAAGTGATCTTTCAGAAAGCTTAGACGGGCCGGGCTGGAAA
AAAAAGCTGTATGGTCATGAAGGCTGGGCTGAGCTGGGCCAAAAGCCCAAGATGTATGATGAATATCCTTAGATGGGCTT
GGGCTAGGCCCATCAGAAAGGGGTGGAAATGAAACCATTGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis