Browse Element(s) Details


OsAffx.31224.1.S1_at

Description tigr:9639.m02742
TID=OsAffx.31224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g303207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30240OsAffx.19083.1.S1_at11/1111+17076205..17079543hypothetical protein
LOC_Os11g30250NANA11+17083108..17083314hypothetical protein
LOC_Os11g30260OsAffx.92.1.S1_at8/1111+17086043..17086818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30270NANA11+17087755..17090316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30280OsAffx.31222.2.S1_x_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30280OsAffx.31222.2.S1_at11/1111+17091458..17092031hypothetical protein
LOC_Os11g30290OsAffx.31223.1.S1_at11/1111+17093777..17094166PHF5-like protein
LOC_Os11g30300OsAffx.19084.1.S1_at4/1111+17096207..17096593hypothetical protein
LOC_Os11g30310OsAffx.11451.4.S1_x_at1/1111+17097206..17098828Reticuline oxidase precursor, putative
LOC_Os11g30320OsAffx.31224.1.S1_at7/1111+17101382..17102759hypothetical protein
LOC_Os11g30320OsAffx.13325.1.S1_at1/1111+17101382..17102759hypothetical protein
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30360Os.9072.1.S1_at11/1111+17123166..17123706expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31224.1.S1_at--561--9311Chr11:17102577..17102601 (25 bp)
TCGCCACCGTCATCAAGGGAATCAG
LOC_Os11g30320
OsAffx.31224.1.S1_at--572--8211Chr11:17102560..17102584 (25 bp)
GGAATCAGCAGCCAGGGAGCTTCTC
LOC_Os11g30320
OsAffx.31224.1.S1_at--872--1551Chr11:17102546..17102567 (22 bp)
AGCTTCTCCGCCATCAGAATGGGTA
LOC_Os11g30320
OsAffx.31224.1.S1_at--91--1911Chr11:17102069..17102090 (22 bp)
AATGGGTAACGCACTGGCTACGGTT
LOC_Os11g30320
OsAffx.31224.1.S1_at--28--82510Chr11:16472414..16472655 (25 bp)
GGCACAGCTACAAAGCTCTTTTTGA
NONE
OsAffx.31224.1.S1_at--569--4091NONE
CGACGACGACACAAGGCACAGATCA
NONE
OsAffx.31224.1.S1_at--689--1271NONE
AGATCAGCCCGCTGGCTCCGAGACG
NONE
OsAffx.31224.1.S1_at--254--6391Chr11:17101515..17101539 (25 bp)
GATCGACAACGACGATGCAGGCGCA
LOC_Os11g30320
OsAffx.31224.1.S1_at--167--8331Chr11:17101477..17101502 (25 bp)
GGCTCTGAGACGAGGTGTCAACAAC
LOC_Os11g30320
OsAffx.31224.1.S1_at--736--5771NONE
GACGAGGTGTCAACAACGACGACAT
NONE
OsAffx.31224.1.S1_at--684--2591NONE
AACGACGACATGCACGTAGCCGGCT
NONE
Target Sequence 
TCGCCACCGTCATCAAGGGAATCAGCAGCCAGGGAGCTTCTCCGCCATCAGAATGGGTAACGCACTGGCTACGGTTTTGG
GCACAGCTACAAAGCTCTTTTTGAGCAAAGGCTGGGATGTTATATTCCATTATCTTAAAAAAATGGACGCCGGCGAGCCC
AAGAGGGCGACAACTGAGGGGAATCGGCAACCGGGGAGCCGAGGGCGAAGCTCAGCGGGACGAGCGGCACGGGGGAAGGA
GATCGGTGGCGGCGGCGGCGAGGGTTGGGGACGACGACGCGGTGGTGGGCAGGGTGGCGATCAGCATGGGGGCGGTGGCC
GGGACCTCGCCGGGGGAGCGGACGACGACGACACAAGGCACAGATCAGCCCGCTGGCTCCGAGACGAGGGGATCGACAAC
GACGATGCAGGCGCAGCCCGGCCCGACGGCTCTGAGACGAGGTGTCAACAACGACGACATGCACGTAGCCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis