Browse Element(s) Details


OsAffx.19090.1.S1_at

Description tigr:9639.m02775
TID=OsAffx.19090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3066011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30620Os.56208.1.S1_at11/1111+17326822..17328667expressed protein
LOC_Os11g30630OsAffx.7260.1.S1_at3/1111+17330636..17331001NA
LOC_Os11g30640NANA11+17334158..17334634hypothetical protein
LOC_Os11g30650NANA11+17342303..17345516retrotransposon protein, putative, unclassified
LOC_Os11g30660OsAffx.19090.1.S1_at11/1111+17347308..17348429hypothetical protein
LOC_Os11g30670NANA11+17349527..17352024retrotransposon protein, putative, LINE subclass
LOC_Os11g30680Os.56335.1.S1_at11/1111+17353956..17355495expressed protein
LOC_Os11g30690NANA11+17371649..17372014hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19090.1.S1_at--699--2831Chr11:17348135..17348159 (25 bp)
AAGTATTTGAGGTTTCCCACTCCTG
LOC_Os11g30660
OsAffx.19090.1.S1_at--717--8611Chr11:17347831..17347855 (25 bp)
TGGTGGTATGGGTTTCCGAGACATT
LOC_Os11g30660
OsAffx.19090.1.S1_at--558--2711Chr11:17347775..17347799 (25 bp)
AAGCTTGGCGACTGCTTGAGTTCCC
LOC_Os11g30660
OsAffx.19090.1.S1_at--405--10771Chr11:17347760..17347784 (25 bp)
TTGAGTTCCCAGATAGCCTATGTGC
LOC_Os11g30660
OsAffx.19090.1.S1_at--121--51Chr11:17347715..17347739 (25 bp)
ATTGTACTGCTTCACCTAGTTGGAA
LOC_Os11g30660
OsAffx.19090.1.S1_at--731--6651Chr11:17347686..17347710 (25 bp)
GTTGAACATGGCCTAGAGCTGCTGA
LOC_Os11g30660
OsAffx.19090.1.S1_at--225--7631Chr11:17347598..17347622 (25 bp)
GGGAGTTCTCAAGCAAACCAATCAC
LOC_Os11g30660
OsAffx.19090.1.S1_at--477--5491Chr11:17347466..17347490 (25 bp)
GAACACATTCTGAAGATCCGACTCC
LOC_Os11g30660
OsAffx.19090.1.S1_at--751--551Chr11:17347451..17347475 (25 bp)
ATCCGACTCCCCTACAGAGAAGAGG
LOC_Os11g30660
OsAffx.19090.1.S1_at--761--211Chr11:17347398..17347422 (25 bp)
ATTTGGTAGGTTCTCTGTGCCAAGC
LOC_Os11g30660
OsAffx.19090.1.S1_at--109--2691Chr11:17347377..17347401 (25 bp)
AAGCGTGTACCATCTTGCAGCTAGG
LOC_Os11g30660
Target Sequence 
AAGTATTTGAGGTTTCCCACTCCTGAAGTGAGGATGAACAAAGACAGCAACCGACGAAGAACACACTGGAAATCTTGGGA
TTCATTGACGAAACCCAAACAATGTGGTGGTATGGGTTTCCGAGACATTAGATTGTTTAATCAAGCTTTGTTGGCCCGCC
AAGCTTGGCGACTGCTTGAGTTCCCAGATAGCCTATGTGCAAGAGTGTTAAAAGCAAAGTATTGTACTGCTTCACCTAGT
TGGAAAGGTGTTGAACATGGCCTAGAGCTGCTGAAACTTGTGTGGAGGATTGGTAATGGGAAATCAGTACTCATTTGGAG
AGATCCTTGGATACCAAGGGAGTTCTCAAGCAAACCAATCACAGTCAAAGATGCAGAACACATTCTGAAGATCCGACTCC
CCTACAGAGAAGAGGAGGATATCATCGCCTGGAATCCTGATAAATTTGGTAGGTTCTCTGTGCCAAGCGTGTACCATCTT
GCAGCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis