Browse Element(s) Details


OsAffx.19093.1.S1_at

Description tigr:9639.m02796
TID=OsAffx.19093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to sulfotransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3089010/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30820Os.15237.1.S1_at11/1111+17443380..17445669expressed protein
LOC_Os11g30830NANA11+17450136..17450678Flavonol sulfotransferase, putative
LOC_Os11g30840NANA11+17450910..17454486retrotransposon protein, putative, unclassified
LOC_Os11g30850OsAffx.22385.1.S1_x_at3/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30850OsAffx.20329.1.S1_at1/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30860NANA11+17459206..17462217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30870Os.39764.1.S1_at6/1111+17462561..17464283hypothetical protein
LOC_Os11g30870Os.39764.1.S1_x_at5/1111+17462561..17464283hypothetical protein
LOC_Os11g30880NANA11+17467650..17468333retrotransposon protein, putative, unclassified
LOC_Os11g30890OsAffx.19093.1.S1_at10/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.10222.1.S1_x_at2/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.6693.1.S1_at1/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30899NANA11+17479922..17481225NA
LOC_Os11g30910Os.27466.1.S1_at11/1111+17482242..17483997Sulfotransferase domain containing protein, expressed
LOC_Os11g30920OsAffx.1319.1.S1_at1/1111+17488463..17491126transposon protein, putative, Mariner sub-class
LOC_Os11g30930OsAffx.31233.2.S1_at11/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.2.S1_s_at9/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.1.S1_at3/1111+17491528..17493962hypothetical protein
LOC_Os11g30940OsAffx.31234.1.S1_at10/1111+17495610..17497102hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19093.1.S1_at--926--8011Chr11:17470600..17470624 (25 bp)
GGAGGAACCACATGTCAACCGAGAT
LOC_Os11g30890
OsAffx.19093.1.S1_at--497--7091Chr11:17470613..17470637 (25 bp)
GTCAACCGAGATGGCAGCGATGCTT
LOC_Os11g30890
OsAffx.19093.1.S1_at--583--1791Chr11:17470617..17470641 (25 bp)
ACCGAGATGGCAGCGATGCTTGACG
LOC_Os11g30890
OsAffx.19093.1.S1_at--660--6051Chr11:17470656..17470680 (25 bp)
GAGTTGCGAGGCTCTGGGTTCACCT
LOC_Os11g30890
OsAffx.19093.1.S1_at--715--891Chr11:17470664..17470688 (25 bp)
AGGCTCTGGGTTCACCTTTGATGGT
LOC_Os11g30890
OsAffx.19093.1.S1_at--254--4311Chr11:17470678..17470702 (25 bp)
CCTTTGATGGTGTTGGTGACTCCAC
LOC_Os11g30890
OsAffx.19093.1.S1_at--898--6251Chr11:17470683..17470707 (25 bp)
GATGGTGTTGGTGACTCCACCCTGA
LOC_Os11g30890
OsAffx.19093.1.S1_at--205--1991NONE
ACTCCACCCTGACGATTACTGTTGA
NONE
OsAffx.19093.1.S1_at--611--6511Chr11:17472579..17472882 (25 bp)
GATATCTGATTTTCAGGTGACTCGA
LOC_Os11g30890
OsAffx.19093.1.S1_at--1020--3591Chr11:17472832..17472983 (25 bp)
CTTGGTGGATAGTAAGGCTAGAGTT
LOC_Os11g30890
OsAffx.19093.1.S1_at--1071--9671Chr11:17473394..17473418 (25 bp)
TCACCGGCGGTAAGACCGGCAGCAA
LOC_Os11g30890
Target Sequence 
GGAGGAACCACATGTCAACCGAGATGGCAGCGATGCTTGACGGGGTTGTCGAGGACGAGTTGCGAGGCTCTGGGTTCACC
TTTGATGGTGTTGGTGACTCCACCCTGACGATTACTGTTGAAGTGGTTTTGGAGATGGAGATTACTGTTGAAGTGGTTTT
GGAGATATCTGATTTTCAGGTGACTCGATGCCTCGGGAGAATATTTACGGTGATGGACCGGGAGTCGGCTTGGTGGATAG
TAAGGCTAGAGTTGATGCACGTGGTTGATGGAGATTCCATATGGCATACGATGGAGAGAGAAGTAATAAAGTTGTCATCT
ACTTTAAGAGTTCTTCGATTTGTGTTTCATCGGGTGCGGCGGTCTAACCGGCAACTCACCGGCGGTAAGACCGGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis