Browse Element(s) Details


Os.27466.1.S1_at

Description gb:AK061003.1
DB_XREF= gi:32971021
TID=Os.27466.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence.
FL= gb:AK061003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3091011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30850OsAffx.22385.1.S1_x_at3/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30850OsAffx.20329.1.S1_at1/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30860NANA11+17459206..17462217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30870Os.39764.1.S1_at6/1111+17462561..17464283hypothetical protein
LOC_Os11g30870Os.39764.1.S1_x_at5/1111+17462561..17464283hypothetical protein
LOC_Os11g30880NANA11+17467650..17468333retrotransposon protein, putative, unclassified
LOC_Os11g30890OsAffx.19093.1.S1_at10/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.10222.1.S1_x_at2/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.6693.1.S1_at1/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30899NANA11+17479922..17481225NA
LOC_Os11g30910Os.27466.1.S1_at11/1111+17482242..17483997Sulfotransferase domain containing protein, expressed
LOC_Os11g30920OsAffx.1319.1.S1_at1/1111+17488463..17491126transposon protein, putative, Mariner sub-class
LOC_Os11g30930OsAffx.31233.2.S1_at11/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.2.S1_s_at9/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.1.S1_at3/1111+17491528..17493962hypothetical protein
LOC_Os11g30940OsAffx.31234.1.S1_at10/1111+17495610..17497102hypothetical protein
LOC_Os11g30950OsAffx.31235.2.A1_at11/1111+17499333..17499821hypothetical protein
LOC_Os11g30960Os.46012.2.S1_x_at7/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.27088.1.A1_x_at5/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.46012.3.S1_x_at4/1111+17508563..17513657retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27466.1.S1_at--234--8391Chr11:17483462..17483486 (25 bp)
GGCGACTCCGAATGAGATCGCATGT
LOC_Os11g30910
Os.27466.1.S1_at--1081--6031Chr11:17483475..17483499 (25 bp)
GAGATCGCATGTGTCAAGCTAGTAT
LOC_Os11g30910
Os.27466.1.S1_at--344--7091Chr11:17483487..17483511 (25 bp)
GTCAAGCTAGTATCTATCTTCTATC
LOC_Os11g30910
Os.27466.1.S1_at--554--6732Chr11:17483568..17483592 (25 bp)
GTTCTCAAGTTGACACGTGGCGCTT
LOC_Os11g30910
Os.27466.1.S1_at--207--2514Chr11:17483636..17483660 (25 bp)
AACATCCGTACATTGATTTTCACTT
LOC_Os11g30910
Os.27466.1.S1_at--1093--5613Chr11:17483719..17483743 (25 bp)
GACACTACAACTATGGTCCCACCTA
LOC_Os11g30910
Os.27466.1.S1_at--1089--4174Chr12:8415918..8415941 (24 bp)
CCCCTAGGTACGTATACATATGGTA
NONE
Os.27466.1.S1_at--332--1433Chr12:8415965..8415985 (21 bp)
AGAAAAAACAACCATGCCGCTCTCC
NONE
Os.27466.1.S1_at--81--4952Chr11:17483882..17483906 (25 bp)
GCATACGTATGTCTTATTTTTGGCT
LOC_Os11g30910
Os.27466.1.S1_at--703--173Chr12:8416058..8416082 (25 bp)
ATTTTTGGCTTGGTACTCTGTAAAG
NONE
Os.27466.1.S1_at--1128--7093Chr12:8416109..8416133 (25 bp)
GTCACTGTGACCATGTGATAGGTAA
NONE
Target Sequence 
GGCGACTCCGAATGAGATCGCATGTGTCAAGCTAGTATCTATCTTCTATCTATTATCTATCTATCTATCTATTATATACT
AAAAGTCCATTAAACTTCCTNAAAACGTTCTCAAGTTGACACGTGGCGCTTTAATAAATTAGAGAAAATCCTAAAAATTC
TGAGAAAAAAGAAAAACATCCGTACATTGATTTTCACTTAAAATTGGTGGGTCCAATATTATAAACCGTTAGATTAGATT
AATCTTAAAGCAAATCGGACACTACAACTATGGTCCCACCTACCTCTCCTCCTCCCCCTAGGTACGTATACATATGGTAT
ACGTATGTATATATCGCAAGAAAAAACAACCATGCCGCTCTCCTTCCTTCTGTATCCCCTCTTCTTCTTTTTCCTTGTAT
AGTTTCTATGAAATACAAATGCATACGTATGTCTTATTTTTGGCTTGGTACTCTGTAAAGGGGAGAAGGGTTAATGCAAA
ATATAAGTCACTGTGACCATGTGATAGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis