Browse Element(s) Details


OsAffx.31235.2.A1_at

Description tigr:9639.m02802
TID=OsAffx.31235.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3095011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30899NANA11+17479922..17481225NA
LOC_Os11g30910Os.27466.1.S1_at11/1111+17482242..17483997Sulfotransferase domain containing protein, expressed
LOC_Os11g30920OsAffx.1319.1.S1_at1/1111+17488463..17491126transposon protein, putative, Mariner sub-class
LOC_Os11g30930OsAffx.31233.2.S1_at11/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.2.S1_s_at9/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.1.S1_at3/1111+17491528..17493962hypothetical protein
LOC_Os11g30940OsAffx.31234.1.S1_at10/1111+17495610..17497102hypothetical protein
LOC_Os11g30950OsAffx.31235.2.A1_at11/1111+17499333..17499821hypothetical protein
LOC_Os11g30960Os.46012.2.S1_x_at7/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.27088.1.A1_x_at5/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.46012.3.S1_x_at4/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30970OsAffx.26069.1.S1_x_at2/1111+17514635..17518000retrotransposon protein, putative, unclassified
LOC_Os11g30980NANA11+17519627..17520073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30990NANA11+17520596..17525003retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31235.2.A1_at--919--1411Chr11:17499673..17499697 (25 bp)
AGAAAGGACACAAGGTCGTCGGCTG
LOC_Os11g30950
OsAffx.31235.2.A1_at--31--4491Chr11:17499598..17499622 (25 bp)
GCCGGCGCGGCGTAGTGCACCTCAA
LOC_Os11g30950
OsAffx.31235.2.A1_at--459--6932Chr11:20198043..20198067 (25 bp)
GTAGTGCACCTCAAGGCCGAGCGAC
NONE
OsAffx.31235.2.A1_at--360--2591Chr11:17499553..17499577 (25 bp)
AACGACAGATGCAGGAGCTGGTTGA
LOC_Os11g30950
OsAffx.31235.2.A1_at--1086--4472Chr11:17499517..17499541 (25 bp)
GCCGGGAATGGCACCGCCACAACGG
LOC_Os11g30950
OsAffx.31235.2.A1_at--426--2211Chr11:17499499..17499523 (25 bp)
ACAACGGCGACCGACTCGAGTTGGG
LOC_Os11g30950
OsAffx.31235.2.A1_at--571--5832Chr11:20197921..20197945 (25 bp)
GACCATGTCCGGAGCGTCGATCCGA
NONE
OsAffx.31235.2.A1_at--462--5892Chr11:20197910..20197934 (25 bp)
GAGCGTCGATCCGAGTGATGCAGCT
NONE
OsAffx.31235.2.A1_at--85--6331Chr11:17499438..17499462 (25 bp)
GATGCAGCTGGAGAACCGCTTCCCG
LOC_Os11g30950
OsAffx.31235.2.A1_at--473--1691Chr11:17499386..17499410 (25 bp)
AGCCAAAACCCCAATATCGTCGATT
LOC_Os11g30950
OsAffx.31235.2.A1_at--1086--492Chr11:17499371..17499395 (25 bp)
ATCGTCGATTTCTTCTGCGACAACT
LOC_Os11g30950
Target Sequence 
AGAAAGGACACAAGGTCGTCGGCTGCCGGTTGCTCGTCGCCGTGCACGCGCGCTCGCGCCTGGCGGACGTGCGGCGCCGG
CGCGGCGTAGTGCACCTCAAGGCCGAGCGACGCGAGCTGCAACGACAGATGCAGGAGCTGGTTGAGGTGGCCCTGCGCCG
GGAATGGCACCGCCACAACGGCGACCGACTCGAGTTGGGCGGCGGCGCGACCATGTCCGGAGCGTCGATCCGAGTGATGC
AGCTGGAGAACCGCTTCCCGTTCGGATCCTGCATCAACAAGACGGCCAGCCAAAACCCCAATATCGTCGATTTCTTCTGC
GACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31235.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis