Browse Element(s) Details


OsAffx.19158.1.S1_at

Description tigr:9639.m03122
TID=OsAffx.19158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g346109/11Serine/threonine-protein kinase receptor precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34550NANA11+19730703..19732974retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34560NANA11+19736037..19736345transposon protein, putative, unclassified
LOC_Os11g34570OsAffx.19157.1.S1_at10/1111+19738097..19739375LysM domain containing protein
LOC_Os11g34580OsAffx.31297.1.S1_at11/1111+19740269..19740538hypothetical protein
LOC_Os11g34590Os.28943.1.S1_x_at2/1111+19742786..19746022retrotransposon protein, putative, unclassified
LOC_Os11g34600NANA11+19746646..19752225retrotransposon protein, putative, unclassified
LOC_Os11g34610OsAffx.19158.1.S1_at9/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34610OsAffx.19159.1.S1_at2/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34624OsAffx.7293.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624OsAffx.19159.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624Os.48647.1.A1_at1/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34640NANA11+19775335..19776520hypothetical protein
LOC_Os11g34650Os.10763.1.S1_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34650Os.10763.2.S1_x_at11/1111+19776764..19780176hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19158.1.S1_at--315--6791Chr11:19757634..19757658 (25 bp)
GTTAGACTCTGATTTAACTCCGGAG
LOC_Os11g34610
OsAffx.19158.1.S1_at--741--10451Chr11:19757647..19757671 (25 bp)
TTAACTCCGGAGATTTCAGACTTTG
LOC_Os11g34610
OsAffx.19158.1.S1_at--586--5351Chr11:19757692..19757716 (25 bp)
GAAGATCAATCACATGTTGTCACAA
LOC_Os11g34610
OsAffx.19158.1.S1_at--1139--4711Chr11:19757725..19758009 (25 bp)
GCTGGGACATATTTTGGTGTTCTTA
LOC_Os11g34610
OsAffx.19158.1.S1_at--247--5391Chr11:19758034..19758058 (25 bp)
GAAGCATGGGTTCCTTCAACGACCA
LOC_Os11g34610
OsAffx.19158.1.S1_at--891--9711Chr11:19758049..19758073 (25 bp)
TCAACGACCATGAGCAATCTTTTAG
LOC_Os11g34610
OsAffx.19158.1.S1_at--392--2631NONE
AATCTTTTAGCCTTCTGGACCTTAT
NONE
OsAffx.19158.1.S1_at--878--8531NONE
TGGACCTTATATGGCAGCACTGGAA
NONE
OsAffx.19158.1.S1_at--9--8171Chr11:19759467..19759491 (25 bp)
GGAACAGCGGGACAATTCTAAATCT
LOC_Os11g34610
OsAffx.19158.1.S1_at--896--10571Chr11:19759482..19759506 (25 bp)
TTCTAAATCTGGTGGATCCTTCGCT
LOC_Os11g34610
OsAffx.19158.1.S1_at--510--4711Chr11:19759521..19759545 (25 bp)
GCGGCCAGCTGATCCAGAGAGACCA
LOC_Os11g34610
Target Sequence 
GTTAGACTCTGATTTAACTCCGGAGATTTCAGACTTTGGATTGGCAAAGTTGTTTGGAGAAGATCAATCACATGTTGTCA
CAAATCGAGTTGCTGGGACATATTTTGGTGTTCTTATTCTTGAGATCATCACGGGAAGAAGAAGCATGGGTTCCTTCAAC
GACCATGAGCAATCTTTTAGCCTTCTGGACCTTATATGGCAGCACTGGAACAGCGGGACAATTCTAAATCTGGTGGATCC
TTCGCTGTCCAGAGACGCCGGCGGCCAGCTGATCCAGAGAGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis