Browse Element(s) Details


OsAffx.19160.1.A1_at

Description tigr:9639.m03132
TID=OsAffx.19160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g348705/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein
LOC_Os11g34840NANA11+19915274..19917823expressed protein
LOC_Os11g34850Os.27616.1.S1_at10/1111+19918770..19922297Maf family protein, putative, expressed
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os11g34870OsAffx.7294.1.S1_at10/1111+19932099..19935754expressed protein
LOC_Os11g34870OsAffx.19160.1.A1_at5/1111+19932099..19935754expressed protein
LOC_Os11g34880Os.54278.1.S1_x_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34880OsAffx.19161.1.S1_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34890OsAffx.31300.1.S1_at11/1111+19951723..19952303hypothetical protein
LOC_Os11g34900OsAffx.19162.1.S1_at11/1111+19953150..19953499hypothetical protein
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein
LOC_Os11g34920Os.52499.1.S1_at11/1111+19959841..19963404stripe rust resistance protein Yr10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19160.1.A1_at--928--8351Chr11:19934044..19934068 (25 bp)
GGCGGAGAGGCGAGTGCCGGCGGAA
LOC_Os11g34870
OsAffx.19160.1.A1_at--446--3951NONE
CGGCAGCATCTTGAGCGCTGATAAG
NONE
OsAffx.19160.1.A1_at--381--4971NONE
GCATCTTGAGCGCTGATAAGCGTGA
NONE
OsAffx.19160.1.A1_at--457--3631NONE
CTTGAGCGCTGATAAGCGTGAGGCC
NONE
OsAffx.19160.1.A1_at--833--4111Chr11:19934159..19934183 (25 bp)
CGCAAGCTCTTTGCCGCTGGGGCGA
LOC_Os11g34870
OsAffx.19160.1.A1_at--514--7631NONE
GGGACGACGGACGATGCTCCTCCGA
NONE
OsAffx.19160.1.A1_at--210--5752Chr11:19934197..19934217 (21 bp)
GACGGACGATGCTCCTCCGAGAGAT
LOC_Os11g34870
OsAffx.19160.1.A1_at--520--8112Chr11:19934197..19934220 (24 bp)
GGACGATGCTCCTCCGAGAGATTCC
LOC_Os11g34870
OsAffx.19160.1.A1_at--1122--6332Chr11:19934200..19934221 (22 bp)
GATGCTCCTCCGAGAGATTCCCATC
LOC_Os11g34870
OsAffx.19160.1.A1_at--424--3811NONE
CTCCGAGAGATTCCCATCCGATCTT
NONE
OsAffx.19160.1.A1_at--208--1351NONE
AGAGATTCCCATCCGATCTTCCTGT
NONE
Target Sequence 
GGCGGAGAGGCGAGTGCCGGCGGAAGCGTCGGCGAGGGGACGCGAGCGCCGGCCGGCAGCATCTTGAGCGCTGATAAGCG
TGAGGCCGCGGCCGCCGGCGGTCAAGGCGGAGCACGAGCGCAAGCTCTTTGCCGCTGGGGCGAGCAAGGGGACGACGGAC
GATGCTCCTCCGAGAGATTCCCATCCGATCTTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19160.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis