Browse Element(s) Details


OsAffx.19195.1.S1_at

Description tigr:9639.m03301
TID=OsAffx.19195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3657011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36550OsAffx.19193.1.S1_at11/1111+21060523..21062235hypothetical protein
LOC_Os11g36560OsAffx.31338.1.S1_at11/1111+21065313..21070948Zinc finger, C3HC4 type family protein
LOC_Os11g36570OsAffx.19195.1.S1_at11/1111+21083311..21083736hypothetical protein
LOC_Os11g36580NANA11+21090202..21092329hypothetical protein
LOC_Os11g36590Os.27639.1.S1_x_at6/1111+21096454..21100408transposon protein, putative, unclassified
LOC_Os11g36590OsAffx.8980.1.S1_at2/1111+21096454..21100408transposon protein, putative, unclassified
LOC_Os11g36600NANA11+21101184..21101663hypothetical protein
LOC_Os11g36610OsAffx.31327.1.S1_at11/1111+21106846..21108354F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19195.1.S1_at--699--7771Chr11:21083646..21083670 (25 bp)
GGTGAAGTGGCGCTCAATCTGCTTC
LOC_Os11g36570
OsAffx.19195.1.S1_at--921--2871Chr11:21083642..21083666 (25 bp)
AAGTGGCGCTCAATCTGCTTCGTCT
LOC_Os11g36570
OsAffx.19195.1.S1_at--121--1911Chr11:21083589..21083613 (25 bp)
ACGTCGATGGAAGTGGAGGCCGCAT
LOC_Os11g36570
OsAffx.19195.1.S1_at--33--2771Chr11:21083499..21083523 (25 bp)
AAGACCCGCCGCCACAGTGCGAGAT
LOC_Os11g36570
OsAffx.19195.1.S1_at--1006--1611Chr11:21083457..21083481 (25 bp)
AGCTGGGTAGCGAGCGGCGGTGCAC
LOC_Os11g36570
OsAffx.19195.1.S1_at--101--7351Chr11:21083438..21083462 (25 bp)
GTGCACATGGCGACGCTGCTCGGCT
LOC_Os11g36570
OsAffx.19195.1.S1_at--690--2112Chr11:21083434..21083458 (25 bp)
ACATGGCGACGCTGCTCGGCTAGCT
LOC_Os11g36570
OsAffx.19195.1.S1_at--1117--9091Chr11:21083422..21083446 (25 bp)
TGCTCGGCTAGCTCGCTCGGGCATC
LOC_Os11g36570
OsAffx.19195.1.S1_at--499--8111Chr11:21083353..21083377 (25 bp)
GGACGCTGGCACACTGCTCGCGGCA
LOC_Os11g36570
OsAffx.19195.1.S1_at--230--8511Chr11:21083347..21083371 (25 bp)
TGGCACACTGCTCGCGGCAATGACG
LOC_Os11g36570
OsAffx.19195.1.S1_at--1085--1971Chr11:21083341..21083365 (25 bp)
ACTGCTCGCGGCAATGACGCGATCT
LOC_Os11g36570
Target Sequence 
GGTGAAGTGGCGCTCAATCTGCTTCGTCTTCCCCCTGCTGCCCCGCCGCCCTCCGGCACGTCGATGGAAGTGGAGGCCGC
ATGGCCCGCATCCGGTCTCGCCGCCCTCGTCTCGCGCGTCTCCTGCTGCTCCTCTCCTCCCACAACGAAGACCCGCCGCC
ACAGTGCGAGATGCGGAGGCGGAGGGCGGAGCTGGGTAGCGAGCGGCGGTGCACATGGCGACGCTGCTCGGCTAGCTCGC
TCGGGCATCGCCATCACGCACCACCCACCGGACGAGGGTGGCATCAGCATGGTGGACGCTGGCACACTGCTCGCGGCAAT
GACGCGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis