Browse Element(s) Details


OsAffx.19237.1.S1_at

Description tigr:9639.m03515
TID=OsAffx.19237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3868011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38660NANA11+22440257..22442781transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38670OsAffx.19236.1.S1_at11/1111+22448108..22452602DEAD-box protein 3, X-chromosomal, putative, expressed
LOC_Os11g38680OsAffx.19237.1.S1_at11/1111+22456307..22456804hypothetical protein
LOC_Os11g38690Os.14491.2.S1_x_at2/1111+22460723..22464420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38690Os.47463.1.S1_x_at1/1111+22460723..22464420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38700NANA11+22466952..22470284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38710OsAffx.7345.1.S1_at11/1111+22472331..22472933hypothetical protein
LOC_Os11g38720Os.33601.3.S1_x_at2/1111+22478148..22482243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38720OsAffx.20631.1.S1_x_at2/1111+22478148..22482243retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19237.1.S1_at--388--1031Chr11:22456362..22456386 (25 bp)
AGGTCATCGCTGCACTCACCGCGGT
LOC_Os11g38680
OsAffx.19237.1.S1_at--1003--471Chr11:22456432..22456456 (25 bp)
GTCGTCCCCACACAAATCCGGTAAT
LOC_Os11g38680
OsAffx.19237.1.S1_at--342--2191Chr11:22456441..22456465 (25 bp)
ACACAAATCCGGTAATCACGAGGCC
LOC_Os11g38680
OsAffx.19237.1.S1_at--306--9271Chr11:22456448..22456472 (25 bp)
TCCGGTAATCACGAGGCCGGATCCG
LOC_Os11g38680
OsAffx.19237.1.S1_at--982--8411Chr11:22456462..22456486 (25 bp)
GGCCGGATCCGTGCCGATAGCGGCA
LOC_Os11g38680
OsAffx.19237.1.S1_at--383--8372Chr12:9807523..9807651 (24 bp)
GGCGTCTCGATCTCGCCAGTGGAGA
NONE
OsAffx.19237.1.S1_at--1097--511Chr11:22456529..22456553 (25 bp)
ATCGAGCGTCGCCACATGGAGCTTG
LOC_Os11g38680
OsAffx.19237.1.S1_at--417--8031Chr11:22456599..22456623 (25 bp)
GGAGGGAGCCCGTCATGGCTCTCTC
LOC_Os11g38680
OsAffx.19237.1.S1_at--402--1671Chr11:22456676..22456700 (25 bp)
AGCCTCCCCCATAGTAGCGGTAGTG
LOC_Os11g38680
OsAffx.19237.1.S1_at--525--1171Chr11:22456688..22456712 (25 bp)
AGTAGCGGTAGTGGATCCGACCTCC
LOC_Os11g38680
OsAffx.19237.1.S1_at--251--8571Chr11:22456699..22456723 (25 bp)
TGGATCCGACCTCCCCTGTCATGGT
LOC_Os11g38680
Target Sequence 
AGGTCATCGCTGCACTCACCGCGGTCGCTGGACCCTGCCGCAACCACAACCCGCCGCCACCATCGAGGTCGTCGTCCCCA
CACAAATCCGGTAATCACGAGGCCGGATCCGTGCCGATAGCGGCAGCGGCGTCTCGATCTCGCCAGTGGAGAAGGGGAGA
GCTCGAGATCGAGCGTCGCCACATGGAGCTTGACGTCGCCGCCACATGGAGTGGGGAGGACCTCATTGCGGCGGCGGGGA
GGGAGCCCGTCATGGCTCTCTCGCGGCCGGATCCGCCGCCCGCGGCCCAGCAGCGGTCGCGTCGTCGTCGCGGCAGCCTC
CCCCATAGTAGCGGTAGTGGATCCGACCTCCCCTGTCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis