Browse Element(s) Details


OsAffx.19266.1.S1_s_at

Description tigr:9639.m03658
TID=OsAffx.19266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4003011/11Cyclin-dependent kinase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.8523.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.56286.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.49524.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009OsAffx.7370.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.52047.1.S1_x_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40030OsAffx.19266.1.S1_s_at11/1111+23364736..23366261Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os11g40040NANA11+23372924..23373412transposon protein, putative, unclassified
LOC_Os11g40050NANA11+23377391..23380693retrotransposon protein, putative, unclassified
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified
LOC_Os11g40070Os.10822.1.S1_at11/1111+23391080..23394815expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045736biological_processnegative regulation of cyclin dependent protein kinase activity
GO:0004861molecular_functioncyclin-dependent protein kinase inhibitor activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19266.1.S1_s_at--1133--1651Chr11:23365646..23365670 (25 bp)
AGCGCCGGCGATTCGCAGAGAAGTA
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--85--2711Chr11:23365937..23365961 (25 bp)
AAGCTAGCTTAATCATCAGCAGCTA
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--1066--391Chr11:23365951..23365975 (25 bp)
ATCAGCAGCTAATTATCTGGGAGAG
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--179--7671Chr11:23365980..23366004 (25 bp)
GGGATCGAGTTAGTGACCTTGTTTC
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--233--8931Chr11:23365993..23366017 (25 bp)
TGACCTTGTTTCTCCTGCTAATTCT
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--825--4271Chr11:23366060..23366084 (25 bp)
CCTGTTGTCAGTTGGATCTCACTAC
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--46--6631Chr11:23366070..23366094 (25 bp)
GTTGGATCTCACTACCATATATATC
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--891--1732Chr11:23366083..23366107 (25 bp)
ACCATATATATCTCAGCTCTGTCAA
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--993--3391Chr11:23366096..23366120 (25 bp)
CAGCTCTGTCAATTAATCTTTTGTA
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--241--631Chr11:23366165..23366189 (25 bp)
ATGCTTCTGATGAGCTCCCCTCTTG
LOC_Os11g40030
OsAffx.19266.1.S1_s_at--259--3811Chr11:23366179..23366203 (25 bp)
CTCCCCTCTTGCTAATTACTAATAT
LOC_Os11g40030
Target Sequence 
AGCGCCGGCGATTCGCAGAGAAGTACAATTACGACATTGCCCTCGACCGCCCGTTGCAAGGCCGCTACGAGTGGGAGCCA
GTGAGCACGTGAAAGGGAGGGGTAGAAGTGTCAACTCAACTCACACCCATGTCTGCAACTCACAAGTGATGCAAAGCTAG
CTTAATCATCAGCAGCTAATTATCTGGGAGAGGCTGGGGATCGAGTTAGTGACCTTGTTTCTCCTGCTAATTCTCAATTA
GGGAATTAATTAATTACTCCTCAATCCTCATCTCCACCTGTTGTCAGTTGGATCTCACTACCATATATATCTCAGCTCTG
TCAATTAATCTTTTGTATAGTTGGTAGGAAATAATCAAGGATAATCCAGGTGATTTGGAGGATGCTTCTGATGAGCTCCC
CTCTTGCTAATTACTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19266.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis