Browse Element(s) Details


OsAffx.1928.1.S1_at

Description tigr:9629.m00345
TID=OsAffx.1928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0427011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1928.1.S1_at--730--4291Chr01:1894062..1894086 (25 bp)
CCTCTGCTGCGTCGTTGTGCTAGTG
LOC_Os01g04270
OsAffx.1928.1.S1_at--918--3771Chr01:1894061..1894085 (25 bp)
CTCTGCTGCGTCGTTGTGCTAGTGG
LOC_Os01g04270
OsAffx.1928.1.S1_at--516--9491Chr01:1894060..1894084 (25 bp)
TCTGCTGCGTCGTTGTGCTAGTGGC
LOC_Os01g04270
OsAffx.1928.1.S1_at--557--9111Chr01:1894058..1894082 (25 bp)
TGCTGCGTCGTTGTGCTAGTGGCCA
LOC_Os01g04270
OsAffx.1928.1.S1_at--871--4771Chr01:1894057..1894081 (25 bp)
GCTGCGTCGTTGTGCTAGTGGCCAC
LOC_Os01g04270
OsAffx.1928.1.S1_at--931--9131Chr01:1894055..1894079 (25 bp)
TGCGTCGTTGTGCTAGTGGCCACCA
LOC_Os01g04270
OsAffx.1928.1.S1_at--670--4651Chr01:1894054..1894078 (25 bp)
GCGTCGTTGTGCTAGTGGCCACCAC
LOC_Os01g04270
OsAffx.1928.1.S1_at--478--7211Chr01:1894052..1894076 (25 bp)
GTCGTTGTGCTAGTGGCCACCACAA
LOC_Os01g04270
OsAffx.1928.1.S1_at--39--9391Chr01:1894051..1894075 (25 bp)
TCGTTGTGCTAGTGGCCACCACAAT
LOC_Os01g04270
OsAffx.1928.1.S1_at--52--4051Chr01:1894050..1894074 (25 bp)
CGTTGTGCTAGTGGCCACCACAATG
LOC_Os01g04270
OsAffx.1928.1.S1_at--65--3391Chr01:1893915..1893939 (25 bp)
CAGAGGGAAGGAAACAAGGCGGGAG
LOC_Os01g04270
Target Sequence 
CCTCTGCTGCGTCGTTGTGCTAGTGGCCACCACAATGCTGAGGAGACGTGCCCGCCACTGCATGGCCACCGTGCTGCCGC
CATGTCGAGGAGCCACATCTACCACCGCTGTGTTGAAAGATGGGAGAGAGGTGCGGAGAGAGAAGTGCAGAGGGAAGGAA
ACAAGGCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis