Browse Element(s) Details


OsAffx.19299.1.S1_at

Description tigr:9639.m03799
TID=OsAffx.19299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4135011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41330OsAffx.31427.1.S1_at11/1111+24283560..24283802hypothetical protein
LOC_Os11g41350OsAffx.19299.1.S1_x_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41350OsAffx.19299.1.S1_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41360OsAffx.19300.1.S1_at11/1111+24311583..24312254MATH domain containing protein
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19299.1.S1_at--169--8771Chr11:24308638..24308662 (25 bp)
TGTTCCGGGCGTTCCTCCACTTCGT
LOC_Os11g41350
OsAffx.19299.1.S1_at--232--7551Chr11:24308525..24308549 (25 bp)
GTGGCGGCGGACAAGTACGACCTGC
LOC_Os11g41350
OsAffx.19299.1.S1_at--1088--4711Chr11:24308490..24308514 (25 bp)
GCTGGTGTGCGAGAGGAAGCTGTCG
LOC_Os11g41350
OsAffx.19299.1.S1_at--215--4791Chr11:24308410..24308434 (25 bp)
GCTGCCATGACCTCAAGGAGGTGGT
LOC_Os11g41350
OsAffx.19299.1.S1_at--885--7491Chr11:24308390..24308414 (25 bp)
GTGGTGCTCAGGTTCATCAGGCTGC
LOC_Os11g41350
OsAffx.19299.1.S1_at--481--9171Chr11:24308368..24308392 (25 bp)
TGCCGGCCAACATGGAGGCCGTCAA
LOC_Os11g41350
OsAffx.19299.1.S1_at--1013--2111Chr11:24308359..24308383 (25 bp)
ACATGGAGGCCGTCAAATGCAGCGA
LOC_Os11g41350
OsAffx.19299.1.S1_at--451--891Chr11:24308353..24308377 (25 bp)
AGGCCGTCAAATGCAGCGATGGATT
LOC_Os11g41350
OsAffx.19299.1.S1_at--1100--4491Chr11:24308351..24308375 (25 bp)
GCCGTCAAATGCAGCGATGGATTCA
LOC_Os11g41350
OsAffx.19299.1.S1_at--479--6251Chr11:24308336..24308360 (25 bp)
GATGGATTCAAGCATCTCCTGGAGA
LOC_Os11g41350
OsAffx.19299.1.S1_at--418--471Chr11:24308323..24308347 (25 bp)
ATCTCCTGGAGAGCTGCCCTTCTCT
LOC_Os11g41350
Target Sequence 
TGTTCCGGGCGTTCCTCCACTTCGTCTACACCGACGAGCTGCCGCCGGGCGAGCTCGACGTCGCCGGCGACGGCGACGCC
GACACGGCGGCGATCATGGCGCAGCACCTGCTGGTGGCGGCGGACAAGTACGACCTGCCGAGGCTGAAGCTGGTGTGCGA
GAGGAAGCTGTCGGAGAGCCTCGGCGCCGGCACGGTGGCGACGACGCTGGCGCTGGCGGAGCAGCACGGCTGCCATGACC
TCAAGGAGGTGGTGCTCAGGTTCATCAGGCTGCCGGCCAACATGGAGGCCGTCAAATGCAGCGATGGATTCAAGCATCTC
CTGGAGAGCTGCCCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis