Browse Element(s) Details


OsAffx.19301.1.S1_at

Description tigr:9639.m03803
TID=OsAffx.19301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4138011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41350OsAffx.19299.1.S1_x_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41350OsAffx.19299.1.S1_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41360OsAffx.19300.1.S1_at11/1111+24311583..24312254MATH domain containing protein
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein
LOC_Os11g41400OsAffx.19303.1.S1_at11/1111+24342684..24343425hypothetical protein
LOC_Os11g41410OsAffx.31428.1.S1_s_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410Os.6083.1.S1_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410OsAffx.19014.1.S1_at1/1111+24346062..24352615expressed protein
LOC_Os11g41420OsAffx.19304.1.S1_at11/1111+24352545..24354916hypothetical protein
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19301.1.S1_at--125--8711Chr11:24334838..24334862 (25 bp)
TGTCCACCTGTCAAGAGCTGTCGAC
LOC_Os11g41380
OsAffx.19301.1.S1_at--616--5891Chr11:24334852..24334876 (25 bp)
GAGCTGTCGACACAGATGGCCCAAA
LOC_Os11g41380
OsAffx.19301.1.S1_at--330--931Chr11:24334954..24334978 (25 bp)
AGGCATTCCAGGTACTTCTCAAGCA
LOC_Os11g41380
OsAffx.19301.1.S1_at--617--2611Chr11:24335211..24335235 (25 bp)
AACCGCATGTACCATTCCAGTTTGG
LOC_Os11g41380
OsAffx.19301.1.S1_at--956--9831Chr11:24335246..24335270 (25 bp)
TACAAGGGTCCAGGTGTCTAGTTCT
LOC_Os11g41380
OsAffx.19301.1.S1_at--606--7651Chr11:24335258..24335282 (25 bp)
GGTGTCTAGTTCTGCCCCGAAGAAA
LOC_Os11g41380
OsAffx.19301.1.S1_at--810--2391Chr11:24335280..24335304 (25 bp)
AAACAGAAGTGTACCACTCCCGGCG
LOC_Os11g41380
OsAffx.19301.1.S1_at--1064--1991Chr11:24335295..24335319 (25 bp)
ACTCCCGGCGCTGTGAAGCAGACAA
LOC_Os11g41380
OsAffx.19301.1.S1_at--800--5511Chr11:24335338..24335362 (25 bp)
GAAAACCAGGGCACGATTCTCGTAG
LOC_Os11g41380
OsAffx.19301.1.S1_at--456--6951Chr11:24335359..24335383 (25 bp)
GTAGATGCCCTGACAATCCGAGGAC
LOC_Os11g41380
OsAffx.19301.1.S1_at--336--8671Chr11:24335384..24335408 (25 bp)
TGTGAACAATCAAGCATCCCGCTCG
LOC_Os11g41380
Target Sequence 
TGTCCACCTGTCAAGAGCTGTCGACACAGATGGCCCAAATCAAGCAAAAATGTTCAGGCACAATGTACTTAACAGCACAG
CCAACGAGATTGTGAAGATGGGTGACTCTGACCCTGAGGCATTCCAGGTACTTCTCAAGCACCATGGTGCTGCGCGGAAG
GAGTTGATGGAGATGATGGCGGCTAAGGTTGATGCATCAAAGAAAACTGGAATGCTGGAGGCAACTTCAGTTGAAGATGC
TGAGCAAGTTAATCCTGGAAGCCAAGAGGTCTGTATTGCTGGGATGGAAATTTATGATAGCGAGAACAACACTGTTGTTA
GTGTAGAACATATTAAGCCACCTGATTCAAGGCGTCACACAGGACGCCCTAGCAACCGCATGTACCATTCCAGTTTGGAT
GGAAGGATTACAAGGGTCCAGGTGTCTAGTTCTGCCCCGAAGAAACAGAAGTGTACCACTCCCGGCGCTGTGAAGCAGAC
AAGGTTCTATAGAGTATGCAGAAAACCAGGGCACGATTCTCGTAGATGCCCTGACAATCCGAGGACTGTGAACAATCAAG
CATCCCGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis