Browse Element(s) Details


Os.6083.1.S1_at

Description gb:AK102163.1
DB_XREF= gi:32987372
TID=Os.6083.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086H01, full insert sequence.
FL= gb:AK102163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4141011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein
LOC_Os11g41400OsAffx.19303.1.S1_at11/1111+24342684..24343425hypothetical protein
LOC_Os11g41410OsAffx.31428.1.S1_s_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410Os.6083.1.S1_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410OsAffx.19014.1.S1_at1/1111+24346062..24352615expressed protein
LOC_Os11g41420OsAffx.19304.1.S1_at11/1111+24352545..24354916hypothetical protein
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein
LOC_Os11g41440NANA11+24363511..24363999hypothetical protein
LOC_Os11g41450OsAffx.19306.1.S1_at10/1111+24367267..24368870hypothetical protein
LOC_Os11g41460NANA11+24369785..24371791hypothetical protein
LOC_Os11g41470OsAffx.10632.1.S1_at1/1111+24372641..24375671retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6083.1.S1_at--982--6631Chr11:24346458..24346482 (25 bp)
GTTGATGGACTGATCACCAATACCT
LOC_Os11g41410
Os.6083.1.S1_at--284--9091Chr11:24346355..24346379 (25 bp)
TGCTCAAAATGTCCTAGAACCTGAT
LOC_Os11g41410
Os.6083.1.S1_at--1087--6291Chr11:24346325..24346349 (25 bp)
GATGAGACTGGGACTACACCTTTGC
LOC_Os11g41410
Os.6083.1.S1_at--453--4411Chr11:24346298..24346322 (25 bp)
GCCAGAATTCCAAGCTCATCGTGGT
LOC_Os11g41410
Os.6083.1.S1_at--701--3751Chr11:24346284..24346308 (25 bp)
CTCATCGTGGTTTTCTTATAAGCAT
LOC_Os11g41410
Os.6083.1.S1_at--570--2371Chr11:24346250..24346274 (25 bp)
AAACCTTGAGCGTTGGGTCTACAAG
LOC_Os11g41410
Os.6083.1.S1_at--239--7691Chr11:24346236..24346260 (25 bp)
GGGTCTACAAGTTCTGATCCGGTGA
LOC_Os11g41410
Os.6083.1.S1_at--445--1231Chr11:24346227..24346251 (25 bp)
AGTTCTGATCCGGTGATGATCCAGG
LOC_Os11g41410
Os.6083.1.S1_at--1026--6351Chr11:24346210..24346234 (25 bp)
GATCCAGGTTTCTAGTGAGTTACAA
LOC_Os11g41410
Os.6083.1.S1_at--258--3691Chr11:24346165..24346189 (25 bp)
CTATTCGTGGTTGATTAGGGTCTGA
LOC_Os11g41410
Os.6083.1.S1_at--439--10251Chr11:24346072..24346096 (25 bp)
TTTGGGTACTATAGTGTTTCATGCT
LOC_Os11g41410
Target Sequence 
GTTGATGGACTGATCACCAATACCTTGGTTGGAATAAAAAATAACCTTGACAAACCAATACAAACTGCAGCCCCCCCAGA
TCCAAATGCTCCTCTATGGAACATGCTCAAAATGTCCTAGAACCTGATGATAAGATGAGACTGGGACTACACCTTTGCAA
GCCAGAATTCCAAGCTCATCGTGGTTTTCTTATAAGCATGGGTCAAGAAAACCTTGAGCGTTGGGTCTACAAGTTCTGAT
CCGGTGATGATCCAGGTTTCTAGTGAGTTACAAGTGCATATTGGTTGCAAAAGCTATTCGTGGTTGATTAGGGTCTGATT
TTTGTTGCACCCTTTTGGTTATGCAATTGCTGNACTATGTGTGTTTAAACAATTGCTAAATATTAATTTGGGTACTATAG
TGTTTCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis