Browse Element(s) Details


OsAffx.19014.1.S1_at

Description tigr:9639.m02296
TID=OsAffx.19014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2560011/11hypothetical protein
LOC_Os11g414101/11expressed protein
LOC_Os02g211001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25570OsAffx.31131.1.S1_at11/1111+14084854..14085562hypothetical protein
LOC_Os11g25590OsAffx.22947.1.S1_x_at7/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.3.S1_x_at5/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.2.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_at3/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25600OsAffx.19014.1.S1_at11/1111+14103518..14104348hypothetical protein
LOC_Os11g25610Os.57095.1.S1_at11/1111+14105322..14107027Zinc finger, C2H2 type family protein, expressed
LOC_Os11g25620OsAffx.31132.1.S1_at11/1111+14110431..14111331hypothetical protein
LOC_Os11g25630NANA11+14111868..14113438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25640OsAffx.12189.2.S1_at1/1111+14118053..14123671hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19014.1.S1_at--351--10331Chr11:14104294..14104318 (25 bp)
TTTCATTCTTTCTTCCTCTTTTGCT
LOC_Os11g25600
OsAffx.19014.1.S1_at--834--2031Chr11:14104263..14104287 (25 bp)
ACTATATGTTATCCAGCCACTGTCG
LOC_Os11g25600
OsAffx.19014.1.S1_at--86--7291Chr11:14103961..14103985 (25 bp)
GTGCCGCCGGAAAGGTCAACCAACA
LOC_Os11g25600
OsAffx.19014.1.S1_at--447--1011Chr11:14103949..14103973 (25 bp)
AGGTCAACCAACAGGAGCGCTGCAA
LOC_Os11g25600
OsAffx.19014.1.S1_at--1101--951Chr11:14103718..14103961 (25 bp)
AGGAGCGCTGCAAAGCCCCTTAAGT
LOC_Os11g25600
OsAffx.19014.1.S1_at--957--2613Chr02:31791805..31791827 (23 bp)
AAGCCCCTTAAGTGGCCTGTATGGA
NONE
OsAffx.19014.1.S1_at--1095--10371Chr11:14103673..14103697 (25 bp)
TTTTCCCGTACAGGCCTCTTAAGAG
LOC_Os11g25600
OsAffx.19014.1.S1_at--780--2991Chr11:14103635..14103659 (25 bp)
AATGAGATCATTTTCGCTTGCGGCT
LOC_Os11g25600
OsAffx.19014.1.S1_at--143--4834Chr11:8188306..8188330 (25 bp)
GCTCACTTAAGCGACCGCATGGAAA
NONE
OsAffx.19014.1.S1_at--652--4916Chr12:21686682..21687128 (25 bp)
ATCGATTTTTCCATACGGACCACTT
NONE
OsAffx.19014.1.S1_at--864--80913Chr11:11370301..11370483 (25 bp)
GGACCACTTAAGGAGCCGTATGCAA
NONE
Target Sequence 
TTTCATTCTTTCTTCCTCTTTTGCTTCTACAACTATATGTTATCCAGCCACTGTCGGGAGCGCCGCGCTAGCGGAGAGGG
CAGACGGGAACGCCACGAGGGAGGAGGCGAGATCGTCGGGCCGGCTGACGTGGGAGGAGCGGCGGCGCTATCCAGCCGGC
GGGAGGGAGGGAAAGGAGCGGCGGTGCACGGGGTCGGTGTTCGGAGGAAGGGCAGGAGAGGAGTGACACCGCGTGGGGAC
TGGTGGGAGAGAGCGGCCCGGAGGCCGGCGGGAGAGGATCAGCGGCGCACGCTGGCCCGGAGGGTCGGAGGGAGAGGAAC
AGCGGCGCATGCCGTGCCGCCGGAAAGGTCAACCAACAGGAGCGCTGCAAAGCCCCTTAAGTGGCCTGTATGGAAAAATC
GATTTTCCCGTACAGGCCTCTTAAGAGGACAGTATGCAAAAATGAGATCATTTTCGCTTGCGGCTCACTTAAGCGACCGC
ATGGAAAAATCGATTTTTCCATACGGACCACTTAAGGAGCCGTATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis