Browse Element(s) Details


Os.57095.1.S1_at

Description gb:AK110914.1
DB_XREF= gi:32996123
TID=Os.57095.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C05, full insert sequence.
FL= gb:AK110914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2561011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25570OsAffx.31131.1.S1_at11/1111+14084854..14085562hypothetical protein
LOC_Os11g25590OsAffx.22947.1.S1_x_at7/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.3.S1_x_at5/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.2.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_at3/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25600OsAffx.19014.1.S1_at11/1111+14103518..14104348hypothetical protein
LOC_Os11g25610Os.57095.1.S1_at11/1111+14105322..14107027Zinc finger, C2H2 type family protein, expressed
LOC_Os11g25620OsAffx.31132.1.S1_at11/1111+14110431..14111331hypothetical protein
LOC_Os11g25630NANA11+14111868..14113438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25640OsAffx.12189.2.S1_at1/1111+14118053..14123671hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57095.1.S1_at--751--6131Chr11:14106461..14106485 (25 bp)
GAGGTAACTTCGTCGGAACCACTTG
LOC_Os11g25610
Os.57095.1.S1_at--555--8811Chr11:14106484..14106508 (25 bp)
TGATCAGCCACCACTACTGTCAATG
LOC_Os11g25610
Os.57095.1.S1_at--383--8291Chr11:14106565..14106589 (25 bp)
GGCATTGCCGCCACAGGATGATCAG
LOC_Os11g25610
Os.57095.1.S1_at--764--3911Chr11:14106704..14106728 (25 bp)
CTGGCGCCTATTGCCGGCATGGGAA
LOC_Os11g25610
Os.57095.1.S1_at--26--8271Chr11:14106719..14106743 (25 bp)
GGCATGGGAACCGTGCGTATTTTCG
LOC_Os11g25610
Os.57095.1.S1_at--157--10231Chr11:14106748..14106772 (25 bp)
TTTGGTTGAGAAGCCGGCACCTGGA
LOC_Os11g25610
Os.57095.1.S1_at--792--4551Chr11:14106797..14106821 (25 bp)
GCGCCTGCATAGATCGTCCTAGTTA
LOC_Os11g25610
Os.57095.1.S1_at--502--10331Chr11:14106845..14106869 (25 bp)
TTTAGCTATCTTCAGAGCCATTAGG
LOC_Os11g25610
Os.57095.1.S1_at--45--8311Chr11:14106884..14106908 (25 bp)
GGCTTTCTTTATTATGTTCACCGCA
LOC_Os11g25610
Os.57095.1.S1_at--1041--7391Chr11:14106946..14106970 (25 bp)
GTGTTTTCTTCGTTGTACTAGCTAG
LOC_Os11g25610
Os.57095.1.S1_at--817--9731Chr11:14106961..14106985 (25 bp)
TACTAGCTAGTTGGCCGGGTTTTCG
LOC_Os11g25610
Target Sequence 
GAGGTAACTTCGTCGGAACCACTTGATCAGCCACCACTACTGTCAATGGTGGTGGGTGCAGAAGTTGCAGCACCGGCGCT
GCTTGCGCTGGCCAACGAGGCAGCGGCATTGCCGCCACAGGATGATCAGGCAGAGGAAGAGGCGGCTGCAGAAGCCGCTG
CACCGGCCGAGGCAGCGGCATTGCGACCGGTTGAGGCAGGGGCAGAGGCGGCCGATGTTGGAGCAGCACCAGAGGAGCCG
CTGCTGGCGCCTATTGCCGGCATGGGAACCGTGCGTATTTTCGGTTTTTTGGTTGAGAAGCCGGCACCTGGAGACGGCAG
TGGAGGAGAGGGTTCAGCGCCTGCATAGATCGTCCTAGTTATGATATTTGATTTTGTGATTTTCTTTAGCTATCTTCAGA
GCCATTAGGATACTTGATTTAGAGGCTTTCTTTATTATGTTCACCGCATAGTAGTTAAGATAATTTTTGCTTTTCGATAG
CAGAAGTGTTTTCTTCGTTGTACTAGCTAGTTGGCCGGGTTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis