Browse Element(s) Details


Os.53334.1.S2_at

Description gb:AK072054.1
DB_XREF= gi:32982077
TID=Os.53334.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112C01, full insert sequence.
FL= gb:AK072054.1 gb:AK111419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g413905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41360OsAffx.19300.1.S1_at11/1111+24311583..24312254MATH domain containing protein
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein
LOC_Os11g41400OsAffx.19303.1.S1_at11/1111+24342684..24343425hypothetical protein
LOC_Os11g41410OsAffx.31428.1.S1_s_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410Os.6083.1.S1_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410OsAffx.19014.1.S1_at1/1111+24346062..24352615expressed protein
LOC_Os11g41420OsAffx.19304.1.S1_at11/1111+24352545..24354916hypothetical protein
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein
LOC_Os11g41440NANA11+24363511..24363999hypothetical protein
LOC_Os11g41450OsAffx.19306.1.S1_at10/1111+24367267..24368870hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53334.1.S2_at--208--10374Chr11:24338587..24338611 (24 bp)
TTTTTACTTGGTTCCTCTATGATTT
LOC_Os11g41390
Os.53334.1.S2_at--467--10671Chr07:9347663..9347687 (25 bp)
TTCCTCTATGATTTTTTAATGATGT
NONE
Os.53334.1.S2_at--973--6271Chr07:9347683..9347707 (25 bp)
GATGTATCAGTAAATGATCAGCAAT
NONE
Os.53334.1.S2_at--517--7031Chr07:9347692..9347716 (25 bp)
GTAAATGATCAGCAATAACGGTATT
NONE
Os.53334.1.S2_at--162--6451Chr07:9347698..9347722 (25 bp)
GATCAGCAATAACGGTATTTTCTTC
NONE
Os.53334.1.S2_at--812--3411Chr07:9347701..9347725 (25 bp)
CAGCAATAACGGTATTTTCTTCAAT
NONE
Os.53334.1.S2_at--970--3171Chr07:9347704..9347728 (25 bp)
CAATAACGGTATTTTCTTCAATTCT
NONE
Os.53334.1.S2_at--31--9572Chr11:24338654..24338678 (25 bp)
TCTTCAATTCTATGTATCAACGTGC
LOC_Os11g41390
Os.53334.1.S2_at--92--9753Chr11:24338657..24338681 (25 bp)
TCAATTCTATGTATCAACGTGCCTT
LOC_Os11g41390
Os.53334.1.S2_at--313--113Chr11:24338660..24338681 (22 bp)
ATTCTATGTATCAACGTGCCTTACG
LOC_Os11g41390
Os.53334.1.S2_at--1--10114Chr11:24338664..24338690 (25 bp)
TATGTATCAACGTGCCTTACGTGCA
LOC_Os11g41390
Target Sequence 
TTTTTACTTGGTTCCTCTATGATTTTTTAATGATGTATCAGTAAATGATCAGCAATAACGGTATTTTCTTCAATTCTATG
TATCAACGTGCCTTACGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53334.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis