Browse Element(s) Details


OsAffx.19300.1.S1_at

Description tigr:9639.m03800
TID=OsAffx.19300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4136011/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41350OsAffx.19299.1.S1_x_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41350OsAffx.19299.1.S1_at11/1111+24308286..24309464BTB/POZ domain containing protein
LOC_Os11g41360OsAffx.19300.1.S1_at11/1111+24311583..24312254MATH domain containing protein
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19300.1.S1_at--113--2871Chr11:24311696..24311720 (25 bp)
AAGGTTGCTTCGTGGCAAGCGTTTC
LOC_Os11g41360
OsAffx.19300.1.S1_at--462--1011Chr11:24311820..24311844 (25 bp)
AGGTTCTCGAAGGATGTCACCGCCG
LOC_Os11g41360
OsAffx.19300.1.S1_at--214--4071Chr11:24311843..24311867 (25 bp)
CGAGGTCCAATTCAGCATGCTACAT
LOC_Os11g41360
OsAffx.19300.1.S1_at--324--151Chr11:24311925..24311949 (25 bp)
ATTAGGCACACGTTCAGGAGCGCGA
LOC_Os11g41360
OsAffx.19300.1.S1_at--71--3211Chr11:24311954..24311978 (25 bp)
CAATGTTAGCAGTTGCGGCATCAGT
LOC_Os11g41360
OsAffx.19300.1.S1_at--547--7511Chr11:24312009..24312033 (25 bp)
GTGGATATGCCGCTGTACAAGTACA
LOC_Os11g41360
OsAffx.19300.1.S1_at--1031--671Chr11:24312046..24312070 (25 bp)
ATGACTCCATCGTCGTTCGGTGTGA
LOC_Os11g41360
OsAffx.19300.1.S1_at--949--3491Chr11:24312099..24312123 (25 bp)
CATGGTGATACCCTCGAGAATCTAG
LOC_Os11g41360
OsAffx.19300.1.S1_at--1150--5231Chr11:24312116..24312140 (25 bp)
GAATCTAGGGTTGATCTGCCACTGC
LOC_Os11g41360
OsAffx.19300.1.S1_at--248--9031Chr11:24312153..24312177 (25 bp)
TGCAAACATCTTCATGACACCTGGC
LOC_Os11g41360
OsAffx.19300.1.S1_at--552--5191Chr11:24312180..24312204 (25 bp)
GCAATGTCTGCTCAACCTGTTGTTG
LOC_Os11g41360
Target Sequence 
AAGGTTGCTTCGTGGCAAGCGTTTCATGTCCCCCAAGTTCAGTGCAGCCGGCCACACCTGGCGCATAGCCTTCTACCCCA
GCGATGGCAATTTGGTCTCCTTCTACCTCCATCTCATCGACGGTAGGTTCTCGAAGGATGTCACCGCCGAGGTCCAATTC
AGCATGCTACATCGTTGCAATAATGCAGATGATGAGATGCCAAAAAACCCATACAATCATCGCAAGATTATTAGGCACAC
GTTCAGGAGCGCGAGCTGCAATGTTAGCAGTTGCGGCATCAGTTGGTTTGTCAATGCAAAGGAGAAGAAGACGGTGGATA
TGCCGCTGTACAAGTACACTAACGAAGACGATGACTCCATCGTCGTTCGGTGTGACATTAAGGTGATGAACAAGCCAGCC
ATCCATGGTGATACCCTCGAGAATCTAGGGTTGATCTGCCACTGCAAGGATGACACCTGCAAACATCTTCATGACACCTG
GCCTGCAATGTCTGCTCAACCTGTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis