Browse Element(s) Details


OsAffx.19312.1.S1_at

Description tigr:9639.m03829
TID=OsAffx.19312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4163011/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41610Os.12350.1.S1_s_at11/1111+24472318..2447405140S ribosomal protein S29, putative, expressed
LOC_Os11g41620NANA11+24474794..24477526transposon protein, putative, Mutator sub-class
LOC_Os11g41630OsAffx.19312.1.S1_at11/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41630OsAffx.29766.1.S1_x_at2/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41640OsAffx.31433.1.S1_at11/1111+24481564..24482895Helix-loop-helix DNA-binding domain containing protein
LOC_Os11g41650OsAffx.7376.1.S1_at11/1111+24487670..24491878Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os11g41659NANA11+24498220..24498413NA
LOC_Os11g41670Os.53307.1.S1_at11/1111+24503513..24507861expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19312.1.S1_at--379--10051Chr11:24478878..24478902 (25 bp)
TAGTTCTACCGTTGATTGTGTGCCC
LOC_Os11g41630
OsAffx.19312.1.S1_at--50--7471Chr11:24478861..24478885 (25 bp)
GTGTGCCCCTCATGCAACGTGAAGA
LOC_Os11g41630
OsAffx.19312.1.S1_at--1022--7971Chr11:24478811..24478835 (25 bp)
GGATGCTAATCGAGGCCGTGTTTTC
LOC_Os11g41630
OsAffx.19312.1.S1_at--816--3031Chr11:24478804..24478828 (25 bp)
AATCGAGGCCGTGTTTTCTACACTT
LOC_Os11g41630
OsAffx.19312.1.S1_at--70--7651Chr11:24478644..24478668 (25 bp)
GGGAGCAAGGTTACATCAATTTTCT
LOC_Os11g41630
OsAffx.19312.1.S1_at--773--8291Chr11:24478609..24478633 (25 bp)
GGCTTCATTGAAGATGGCACTAAGG
LOC_Os11g41630
OsAffx.19312.1.S1_at--58--3591Chr11:24478575..24478599 (25 bp)
CATTAAGGGTGGATCTGGAGCAAGA
LOC_Os11g41630
OsAffx.19312.1.S1_at--940--4731Chr11:24478510..24478534 (25 bp)
GCTGTAGTGCCCATTGCTAGAGAAC
LOC_Os11g41630
OsAffx.19312.1.S1_at--323--9171Chr11:24478503..24478527 (25 bp)
TGCCCATTGCTAGAGAACTACTGTT
LOC_Os11g41630
OsAffx.19312.1.S1_at--1109--9911Chr11:24478485..24478509 (25 bp)
TACTGTTGGCAGTGAAGGGCATGCT
LOC_Os11g41630
OsAffx.19312.1.S1_at--834--2871Chr11:24478471..24478495 (25 bp)
AAGGGCATGCTAGTTTTAGGGTTAT
LOC_Os11g41630
Target Sequence 
TAGTTCTACCGTTGATTGTGTGCCCCTCATGCAACGTGAAGACCATTGTGAGATGCACAGCGAAGACGGATGCTAATCGA
GGCCGTGTTTTCTACACTTGTCCTGACCATGAGAAAGATGGATCTGGGTGTAACTTTTGGTATTGGGAGCAAGGTTACAT
CAATTTTCTCAAGAGGAATGGCTTCATTGAAGATGGCACTAAGGGGAAGAGTGCATTAAGGGTGGATCTGGAGCAAGATG
ATTTTGGCAGACAAGATGAACTAGAGAAGAATTTGATAGCTGTAGTGCCCATTGCTAGAGAACTACTGTTGGCAGTGAAG
GGCATGCTAGTTTTAGGGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis