Browse Element(s) Details


OsAffx.19328.1.S1_at

Description tigr:9639.m03889
TID=OsAffx.19328.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4223011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g42200Os.54291.1.S1_at10/1111+24922346..24924690Multicopper oxidase family protein, expressed
LOC_Os11g42210OsAffx.7383.1.S1_at11/1111+24925041..24927958hypothetical protein
LOC_Os11g42220Os.8440.1.S1_at11/1111+24931076..24933436Multicopper oxidase family protein, expressed
LOC_Os11g42230OsAffx.19328.1.S1_at11/1111+24933751..24935553F-box domain containing protein
LOC_Os11g42240OsAffx.31437.1.S1_at11/1111+24939519..24941477F-box domain containing protein
LOC_Os11g42250Os.17297.1.S1_at1/1111+24950559..24954980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42260Os.45173.1.S1_x_at1/1111+24955248..24957188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42270Os.54888.1.S1_at11/1111+24959891..24961625F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19328.1.S1_at--436--9092Chr11:24934285..24934309 (25 bp)
TGCTCTGGTCGACCTCAGTCTGAAG
LOC_Os11g42230
OsAffx.19328.1.S1_at--972--1291Chr11:24934256..24934280 (25 bp)
AGATGCTCAACTACGCATGGTCGAA
LOC_Os11g42230
OsAffx.19328.1.S1_at--825--7011Chr11:24934219..24934243 (25 bp)
GTACTTGAGTTCATTTCATGCGAAA
LOC_Os11g42230
OsAffx.19328.1.S1_at--570--6511Chr11:24934185..24934209 (25 bp)
GATTTCGACAAATCCGTTGGTCTGT
LOC_Os11g42230
OsAffx.19328.1.S1_at--169--6631Chr11:24934170..24934194 (25 bp)
GTTGGTCTGTTCATGCGTCACAAAT
LOC_Os11g42230
OsAffx.19328.1.S1_at--817--8951Chr11:24934139..24934163 (25 bp)
TGACAGCGGTTTCATCATCCTTGAT
LOC_Os11g42230
OsAffx.19328.1.S1_at--50--7531Chr11:24934070..24934094 (25 bp)
GTGGAAAATCATTCGCCTGCTTGAA
LOC_Os11g42230
OsAffx.19328.1.S1_at--767--9031Chr11:24934022..24934046 (25 bp)
TGCAGTTTCAGTTGGGTTCGGCCTC
LOC_Os11g42230
OsAffx.19328.1.S1_at--928--10231Chr11:24933990..24934014 (25 bp)
TTTGGAGTCCGGCTTATCAGATTCT
LOC_Os11g42230
OsAffx.19328.1.S1_at--156--8051Chr11:24933870..24933894 (25 bp)
GGAGTTGATTCGTCCAAGATTCGTT
LOC_Os11g42230
OsAffx.19328.1.S1_at--282--3151Chr11:24933802..24933826 (25 bp)
AATTCATCCAGATTCGGCACCAGAG
LOC_Os11g42230
Target Sequence 
TGCTCTGGTCGACCTCAGTCTGAAGCTCAAGATGCTCAACTACGCATGGTCGAAGAATAATAGTATGTACTTGAGTTCAT
TTCATGCGAAATTCAAGCCAGATTTCGACAAATCCGTTGGTCTGTTCATGCGTCACAAATCGAAGATGACAGCGGTTTCA
TCATCCTTGATCGATGAACACCATGATGATAAGTTTTCTAACATCTCTGGATTGAGTGGAAAATCATTCGCCTGCTTGAA
TAGAAGTCTCAGAAGAGTAAATCTGCAGTTTCAGTTGGGTTCGGCCTCCAACTGTTTTGGAGTCCGGCTTATCAGATTCT
TCGCTCAAAATGCGATGGTTTTGGAAGAAATGTGCATCGACAGTGGTAACAGAAAACTCTGTGAGCACATGAATCTCAAT
GTTGAAAGATGGGTTGGAGTTGATTCGTCCAAGATTCGTTTGAAAGACAAGAATTTAACAGGGAGTTCATGGGAGTTTTC
AAGAATTCATCCAGATTCGGCACCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis