Browse Element(s) Details


OsAffx.19332.1.S1_at

Description tigr:9639.m03910
TID=OsAffx.19332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to sugar transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4243011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42390OsAffx.19331.1.S1_at11/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42390Os.46869.2.S1_x_at5/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein
LOC_Os11g42410NANA11+25021292..25024910expressed protein
LOC_Os11g42420Os.8764.1.A1_a_at11/1111+25026877..25035897Nuclear pore protein 84/107 containing protein, expressed
LOC_Os11g42430OsAffx.19332.1.S1_at11/1111+25035988..25039028Sugar transporter family protein, expressed
LOC_Os11g42440OsAffx.19333.1.S1_at11/1111+25041385..25046180Protein kinase domain containing protein, expressed
LOC_Os11g42450OsAffx.31440.1.S1_at11/1111+25050757..25051950Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19332.1.S1_at--882--2091Chr11:25037319..25037343 (25 bp)
ACATCCGTCCTGTCATTGTTGGTGT
LOC_Os11g42430
OsAffx.19332.1.S1_at--773--8211Chr11:25037257..25037281 (25 bp)
GGAATCTTGTTCTATGCCAGTGAAA
LOC_Os11g42430
OsAffx.19332.1.S1_at--912--391Chr11:25037140..25037249 (25 bp)
ATCAGCCGGGTTTGCTTCAGGAGAC
LOC_Os11g42430
OsAffx.19332.1.S1_at--957--3171Chr11:25036827..25036851 (25 bp)
AATTGGCTCTCTCATGTCAGCAGTA
LOC_Os11g42430
OsAffx.19332.1.S1_at--521--7111Chr11:25036812..25036836 (25 bp)
GTCAGCAGTATCCTTCTACCTGAAG
LOC_Os11g42430
OsAffx.19332.1.S1_at--621--3451Chr11:25036493..25036517 (25 bp)
CAGTCCCTTGGGTCATAATGTCAGA
LOC_Os11g42430
OsAffx.19332.1.S1_at--918--5251Chr11:25036337..25036361 (25 bp)
GAATCGGTGGAAGCTTTGTGACTCT
LOC_Os11g42430
OsAffx.19332.1.S1_at--420--8651Chr11:25036293..25036317 (25 bp)
TGGGCAGTTTCTTTTGCCTTCAACT
LOC_Os11g42430
OsAffx.19332.1.S1_at--211--4451Chr11:25036278..25036302 (25 bp)
GCCTTCAACTTCTTCATGAGCTGGA
LOC_Os11g42430
OsAffx.19332.1.S1_at--784--5671Chr11:25036084..25036108 (25 bp)
GACATTCTTCCTTTTCGCATTAGTT
LOC_Os11g42430
OsAffx.19332.1.S1_at--622--151Chr11:25036066..25036090 (25 bp)
ATTAGTTTGCGCAGTGGCCATCCTT
LOC_Os11g42430
Target Sequence 
ACATCCGTCCTGTCATTGTTGGTGTTGGCCTGATGGTGTTCCAGCAGTTTGTAGGAATTAATGGAATCTTGTTCTATGCC
AGTGAAACTTTTGTATCAGCCGGGTTTGCTTCAGGAGACCTAGGAACAATCTTGATGGGGTGTATCCAGGCGCCAATCAC
AGCTGTTGGAGCATTACTGATGGACAGAAGTGGTAGAAGGCCACTGCTGTTGATTTCAACATCAGGACTCCTAATTGGCT
CTCTCATGTCAGCAGTATCCTTCTACCTGAAGGTGTACATTGCTAGCTATTCAATAGGAATGGGGGCAGTCCCTTGGGTC
ATAATGTCAGAGATATTTCCCATAAATATAAAAGGAATCGGTGGAAGCTTTGTGACTCTGGTGAACTGGTCCGGTTCATG
GGCAGTTTCTTTTGCCTTCAACTTCTTCATGAGCTGGAGTTCTTCAGGGACATTCTTCCTTTTCGCATTAGTTTGCGCAG
TGGCCATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis